Back to Build/check report for BioC 3.14 experimental data
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This page was generated on 2021-10-16 15:51:46 -0400 (Sat, 16 Oct 2021).

BUILD results for curatedBladderData on nebbiolo2

To the developers/maintainers of the curatedBladderData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 80/404HostnameOS / ArchINSTALLBUILDCHECK
curatedBladderData 1.29.0  (landing page)
Markus Riester
Snapshot Date: 2021-10-16 09:30:02 -0400 (Sat, 16 Oct 2021)
git_url: https://git.bioconductor.org/packages/curatedBladderData
git_branch: master
git_last_commit: adb88cc
git_last_commit_date: 2021-05-19 11:43:41 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: curatedBladderData
Version: 1.29.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedBladderData
StartedAt: 2021-10-16 11:13:22 -0400 (Sat, 16 Oct 2021)
EndedAt: 2021-10-16 11:13:48 -0400 (Sat, 16 Oct 2021)
EllapsedTime: 25.6 seconds
RetCode: 0
Status:   OK  
PackageFile: curatedBladderData_1.29.0.tar.gz
PackageFileSize: 74.92 MiB

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedBladderData
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* checking for file ‘curatedBladderData/DESCRIPTION’ ... OK
* preparing ‘curatedBladderData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX .
Creating pdf output from LaTeX ...

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edictive value of progression-related gene classifier in primary non-muscle inv
asive bladder cancer. Mol Cancer 2010 Jan 8;9:3.[] 

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JL, Baehner F, Mehta K, Devries S, Koppie T, Pejavar S, Carroll P, Waldman FM. 
Bladder cancer outcome and subtype classification by gene expression.Clin Cance
r Res. 2005 Jun 1;11(11):4044-55.[] 
[6] [7] [8]
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 []  \T1/zi4/m/n/10 Experimenter name: Lindgren D, Frigyesi A, Gudjonsson S, Sj
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sic molecular subtypes of urothelial carcinoma and gene signatures for molecula
r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[] 

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r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[] 

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[11] [12] [13]
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l. A candidate molecular biomarker panel for the detection of bladder cancer. C
ancer Epidemiol Biomarkers Prev 2012 Dec;21(12):2149-58.[] 
[14]
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am improves the prediction of survival in high-risk bladder cancer. Clin Cancer
 Res 2012 Mar 1;18(5):1323-33.[] 
[15]
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[16]
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 []  \T1/zi4/m/n/10 Experimenter name: Sj?dahl G, Lauss M, L?vgren K, Chebil G 
et al. A molecular taxonomy for urothelial carcinoma. Clin Cancer Res 2012 Jun 
15;18(12):3377-86.[] 
[19] [20] [21]
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 []  \T1/zi4/m/n/10 Experimenter name: Smith SC, Baras AS, Owens CR, Dancik G e
t al. Transcriptional signatures of Ral GTPase are associated with aggressive c
linicopathologic characteristics in human cancer. Cancer Res 2012 Jul 15;72(14)
:3480-91.[] 

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low-ing
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 []  \T1/zi4/m/n/10 Experimenter name: Als AB, Dyrskj?t L, von der Maase H, Koe
d K et al. Emmprin and survivin predict response and survival following cisplat
in-containing chemotherapy in patients with advanced bladder cancer. Clin Cance
r Res 2007 Aug 1;13(15 Pt 1):4407-14.[] 

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ncer.[] 
[24] [25]
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sen JL et al. Identifying distinct classes of bladder carcinoma using microarra
ys. Nat Genet 2003 Jan;33(1):90-6.[] 
[26] [27]
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ierrot I, de Medina SG, Segraves R, de Rycke Y, Elvin P, Cassidy A, Spraggon C,
 Graham A, Southgate J, Asselain B, Allory Y, Abbou CC, Albertson DG, Thiery JP
, Chopin DK, Pinkel D, Radvanyi F. Regional copy number-independent deregulatio
n of transcription in cancer. Nat Genet. 2006 Dec;38(12):1386-96. Epub 2006 Nov
 12.[] 
[28] [29] [30]
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 Graham A, Southgate J, Asselain B, Allory Y, Abbou CC, Albertson DG, Thiery JP
, Chopin DK, Pinkel D, Radvanyi F. Regional copy number-independent deregulatio
n of transcription in cancer. Nat Genet. 2006 Dec;38(12):1386-96. Epub 2006 Nov
 12.[] 
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 []  \T1/zi4/m/n/10 Experimenter name: Kim WJ, Kim EJ, Kim SK, Kim YJ et al. Pr
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asive bladder cancer. Mol Cancer 2010 Jan 8;9:3.[] 

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 []  \T1/zi4/m/n/10 Title: Predictive value of progression-related gene classif
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 []  \T1/zi4/m/n/10 Experimenter name: Blaveri E, Simko JP, Korkola JE, Brewer 
JL, Baehner F, Mehta K, Devries S, Koppie T, Pejavar S, Carroll P, Waldman FM. 
Bladder cancer outcome and subtype classification by gene expression.Clin Cance
r Res. 2005 Jun 1;11(11):4044-55.[] 
[6] [7] [8]
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 []  \T1/zi4/m/n/10 Experimenter name: Lindgren D, Frigyesi A, Gudjonsson S, Sj
?dahl G et al. Combined gene expression and genomic profiling define two intrin
sic molecular subtypes of urothelial carcinoma and gene signatures for molecula
r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[] 

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[9] [10]
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sic molecular subtypes of urothelial carcinoma and gene signatures for molecula
r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[] 

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[11] [12] [13]
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ancer Epidemiol Biomarkers Prev 2012 Dec;21(12):2149-58.[] 
[14] [15]
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 et al. Combination of a novel gene expression signature with a clinical nomogr
am improves the prediction of survival in high-risk bladder cancer. Clin Cancer
 Res 2012 Mar 1;18(5):1323-33.[] 

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 []  \T1/zi4/m/n/10 Title: Combination of a novel gene expression signature wit
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15;18(12):3377-86.[] 
[19] [20] [21]
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r Res 2007 Aug 1;13(15 Pt 1):4407-14.[] 

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[28] [29] [30]
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asive bladder cancer. Mol Cancer 2010 Jan 8;9:3.[] 

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[6] [7] [8]
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[11] [12] [13]
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[14] [15]
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am improves the prediction of survival in high-risk bladder cancer. Clin Cancer
 Res 2012 Mar 1;18(5):1323-33.[] 

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[19] [20] [21]
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linicopathologic characteristics in human cancer. Cancer Res 2012 Jul 15;72(14)
:3480-91.[] 

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in-containing chemotherapy in patients with advanced bladder cancer. Clin Cance
r Res 2007 Aug 1;13(15 Pt 1):4407-14.[] 

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ys. Nat Genet 2003 Jan;33(1):90-6.[] 
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 []  \T1/zi4/m/n/10 Experimenter name: Kim WJ, Kim EJ, Kim SK, Kim YJ et al. Pr
edictive value of progression-related gene classifier in primary non-muscle inv
asive bladder cancer. Mol Cancer 2010 Jan 8;9:3.[] 

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 []  \T1/zi4/m/n/10 Title: Predictive value of progression-related gene classif
ier in primary non-muscle invasive bladder cancer.[] 
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[5]
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 []  \T1/zi4/m/n/10 Experimenter name: Blaveri E, Simko JP, Korkola JE, Brewer 
JL, Baehner F, Mehta K, Devries S, Koppie T, Pejavar S, Carroll P, Waldman FM. 
Bladder cancer outcome and subtype classification by gene expression.Clin Cance
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 []  \T1/zi4/m/n/10 Experimenter name: Lindgren D, Frigyesi A, Gudjonsson S, Sj
?dahl G et al. Combined gene expression and genomic profiling define two intrin
sic molecular subtypes of urothelial carcinoma and gene signatures for molecula
r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[] 

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 []  \T1/zi4/m/n/10 Title: Combined gene expression and genomic profiling defin
e two intrinsic molecular subtypes of urothelial carcinoma and gene signatures 
for molecular grading and outcome.[] 
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 []  \T1/zi4/m/n/10 Experimenter name: Lindgren D, Frigyesi A, Gudjonsson S, Sj
?dahl G et al. Combined gene expression and genomic profiling define two intrin
sic molecular subtypes of urothelial carcinoma and gene signatures for molecula
r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[] 

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 []  \T1/zi4/m/n/10 Title: Combined gene expression and genomic profiling defin
e two intrinsic molecular subtypes of urothelial carcinoma and gene signatures 
for molecular grading and outcome.[] 
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 []  \T1/zi4/m/n/10 Experimenter name: Riester M, Taylor JM, Feifer A, Koppie T
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[16]
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 []  \T1/zi4/m/n/10 Experimenter name: Sj?dahl G, Lauss M, L?vgren K, Chebil G 
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15;18(12):3377-86.[] 
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 []  \T1/zi4/m/n/10 Experimenter name: Smith SC, Baras AS, Owens CR, Dancik G e
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linicopathologic characteristics in human cancer. Cancer Res 2012 Jul 15;72(14)
:3480-91.[] 

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ted with aggressive clinicopathologic characteristics in human cancer.[] 
[22]
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[] \T1/ptm/m/it/10 Emm-prin and sur-vivin pre-dict re-sponse and sur-vival fol-
low-ing
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 []  \T1/zi4/m/n/10 Experimenter name: Als AB, Dyrskj?t L, von der Maase H, Koe
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in-containing chemotherapy in patients with advanced bladder cancer. Clin Cance
r Res 2007 Aug 1;13(15 Pt 1):4407-14.[] 

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ollowing cisplatin-containing chemotherapy in patients with advanced bladder ca
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 []  \T1/zi4/m/n/10 Experimenter name: Dyrskj?t L, Thykjaer T, Kruh?ffer M, Jen
sen JL et al. Identifying distinct classes of bladder carcinoma using microarra
ys. Nat Genet 2003 Jan;33(1):90-6.[] 
[27]
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 []  \T1/zi4/m/n/10 Experimenter name: Stransky N, Vallot C, Reyal F, Bernard-P
ierrot I, de Medina SG, Segraves R, de Rycke Y, Elvin P, Cassidy A, Spraggon C,
 Graham A, Southgate J, Asselain B, Allory Y, Abbou CC, Albertson DG, Thiery JP
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ierrot I, de Medina SG, Segraves R, de Rycke Y, Elvin P, Cassidy A, Spraggon C,
 Graham A, Southgate J, Asselain B, Allory Y, Abbou CC, Albertson DG, Thiery JP
, Chopin DK, Pinkel D, Radvanyi F. Regional copy number-independent deregulatio
n of transcription in cancer. Nat Genet. 2006 Dec;38(12):1386-96. Epub 2006 Nov
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