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This page was generated on 2021-10-16 15:51:46 -0400 (Sat, 16 Oct 2021).

CHECK results for RegParallel on nebbiolo2

To the developers/maintainers of the RegParallel package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 301/404HostnameOS / ArchINSTALLBUILDCHECK
RegParallel 1.11.9  (landing page)
Kevin Blighe
Snapshot Date: 2021-10-16 09:30:02 -0400 (Sat, 16 Oct 2021)
git_url: https://git.bioconductor.org/packages/RegParallel
git_branch: master
git_last_commit: 818b7b4
git_last_commit_date: 2021-10-01 19:16:39 -0400 (Fri, 01 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: RegParallel
Version: 1.11.9
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:RegParallel.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings RegParallel_1.11.9.tar.gz
StartedAt: 2021-10-16 12:30:46 -0400 (Sat, 16 Oct 2021)
EndedAt: 2021-10-16 12:32:07 -0400 (Sat, 16 Oct 2021)
EllapsedTime: 81.4 seconds
RetCode: 0
Status:   OK  
CheckDir: RegParallel.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:RegParallel.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings RegParallel_1.11.9.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/RegParallel.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RegParallel/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RegParallel’ version ‘1.11.9’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  'doParallel', 'foreach', 'parallel', 'iterators', 'data.table',
  'stringr', 'survival', 'arm'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RegParallel’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
RegParallel      36.415  2.495  19.603
bayesglmParallel 23.321  0.644  12.255
glmParallel       9.606  2.845   5.002
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/RegParallel.Rcheck/00check.log’
for details.



Installation output

RegParallel.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL RegParallel
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘RegParallel’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RegParallel)

Tests output

RegParallel.Rcheck/tests/runTests.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage('RegParallel')

arm (Version 1.12-2, built: 2021-10-15)

Working directory is /home/biocbuild/bbs-3.14-data-experiment/meat/RegParallel.Rcheck/tests



RUNIT TEST PROTOCOL -- Sat Oct 16 12:32:05 2021 
*********************************************** 
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
RegParallel RUnit Tests - 0 test functions, 0 errors, 0 failures
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  1.503   0.135   1.619 

Example timings

RegParallel.Rcheck/RegParallel-Ex.timings

nameusersystemelapsed
RegParallel36.415 2.49519.603
bayesglmParallel23.321 0.64412.255
clogitParallel4.0980.2002.710
coxphParallel4.6680.2162.635
glmParallel9.6062.8455.002
lmParallel1.1610.3631.138
svyglmParallel0.1910.0240.215