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This page was generated on 2021-11-28 18:35:03 -0500 (Sun, 28 Nov 2021).

CHECK results for PtH2O2lipids on nebbiolo2

To the developers/maintainers of the PtH2O2lipids package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 288/404HostnameOS / ArchINSTALLBUILDCHECK
PtH2O2lipids 1.21.0  (landing page)
James Collins
Snapshot Date: 2021-11-28 08:30:02 -0500 (Sun, 28 Nov 2021)
git_url: https://git.bioconductor.org/packages/PtH2O2lipids
git_branch: master
git_last_commit: 01ac360
git_last_commit_date: 2021-10-26 12:27:34 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: PtH2O2lipids
Version: 1.21.0
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:PtH2O2lipids.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings PtH2O2lipids_1.21.0.tar.gz
StartedAt: 2021-11-28 15:00:24 -0500 (Sun, 28 Nov 2021)
EndedAt: 2021-11-28 15:04:01 -0500 (Sun, 28 Nov 2021)
EllapsedTime: 217.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: PtH2O2lipids.Rcheck
Warnings: 2

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:PtH2O2lipids.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings PtH2O2lipids_1.21.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/PtH2O2lipids.Rcheck’
* using R Under development (unstable) (2021-11-16 r81199)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PtH2O2lipids/DESCRIPTION’ ... OK
* this is package ‘PtH2O2lipids’ version ‘1.21.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PtH2O2lipids’ can be installed ... WARNING
Found the following significant warnings:
  Warning: multiple methods tables found for ‘polarity<-’
  Warning: replacing previous import ‘xcms::polarity<-’ by ‘LOBSTAHS::polarity<-’ when loading ‘PtH2O2lipids’
See ‘/home/biocbuild/bbs-3.15-data-experiment/meat/PtH2O2lipids.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
  installed size is 15.6Mb
  sub-directories of 1Mb or more:
    data  15.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'PtH2O2lipids.Rd':
  ‘LOBSet-class-class’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/PtH2O2lipids.Rcheck/00check.log’
for details.



Installation output

PtH2O2lipids.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL PtH2O2lipids
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’
* installing *source* package ‘PtH2O2lipids’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
multiple methods tables found for ‘polarity<-’ 
Warning: replacing previous import ‘xcms::polarity<-’ by ‘LOBSTAHS::polarity<-’ when loading ‘PtH2O2lipids’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Warning: multiple methods tables found for ‘polarity<-’
Warning: replacing previous import ‘xcms::polarity<-’ by ‘LOBSTAHS::polarity<-’ when loading ‘PtH2O2lipids’
** testing if installed package can be loaded from final location
Warning: multiple methods tables found for ‘polarity<-’
Warning: replacing previous import ‘xcms::polarity<-’ by ‘LOBSTAHS::polarity<-’ when loading ‘PtH2O2lipids’
** testing if installed package keeps a record of temporary installation path
* DONE (PtH2O2lipids)

Tests output


Example timings

PtH2O2lipids.Rcheck/PtH2O2lipids-Ex.timings

nameusersystemelapsed
PtH2O2lipids0.0170.0120.029