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This page was generated on 2021-10-23 15:51:47 -0400 (Sat, 23 Oct 2021).

CHECK results for ListerEtAlBSseq on nebbiolo2

To the developers/maintainers of the ListerEtAlBSseq package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 200/408HostnameOS / ArchINSTALLBUILDCHECK
ListerEtAlBSseq 1.25.0  (landing page)
Kamal Kishore
Snapshot Date: 2021-10-23 09:30:01 -0400 (Sat, 23 Oct 2021)
git_url: https://git.bioconductor.org/packages/ListerEtAlBSseq
git_branch: master
git_last_commit: 0b12360
git_last_commit_date: 2021-05-19 11:48:18 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: ListerEtAlBSseq
Version: 1.25.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ListerEtAlBSseq.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ListerEtAlBSseq_1.25.0.tar.gz
StartedAt: 2021-10-23 12:26:34 -0400 (Sat, 23 Oct 2021)
EndedAt: 2021-10-23 12:28:28 -0400 (Sat, 23 Oct 2021)
EllapsedTime: 113.8 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: ListerEtAlBSseq.Rcheck
Warnings: 1

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ListerEtAlBSseq.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ListerEtAlBSseq_1.25.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/ListerEtAlBSseq.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ListerEtAlBSseq/DESCRIPTION’ ... OK
* this is package ‘ListerEtAlBSseq’ version ‘1.25.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ListerEtAlBSseq’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 659.0Mb
  sub-directories of 1Mb or more:
    data       2.9Mb
    extdata  656.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘ListerEtAlBSseq.rnw’
Files named as vignettes but with no recognized vignette engine:
   ‘vignettes/ListerEtAlBSseq.rnw’
(Is a VignetteBuilder field missing?)
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/ListerEtAlBSseq.Rcheck/00check.log’
for details.



Installation output

ListerEtAlBSseq.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL ListerEtAlBSseq
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘ListerEtAlBSseq’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe'
** testing if installed package can be loaded from final location
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe'
** testing if installed package keeps a record of temporary installation path
* DONE (ListerEtAlBSseq)

Tests output


Example timings

ListerEtAlBSseq.Rcheck/ListerEtAlBSseq-Ex.timings

nameusersystemelapsed
H1.WGBS0.2310.0030.328
IMR90.WGBS0.1880.0080.196