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This page was generated on 2021-10-21 15:52:03 -0400 (Thu, 21 Oct 2021).

CHECK results for CardinalWorkflows on nebbiolo2

To the developers/maintainers of the CardinalWorkflows package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 47/406HostnameOS / ArchINSTALLBUILDCHECK
CardinalWorkflows 1.25.1  (landing page)
Kylie A. Bemis
Snapshot Date: 2021-10-21 09:30:01 -0400 (Thu, 21 Oct 2021)
git_url: https://git.bioconductor.org/packages/CardinalWorkflows
git_branch: master
git_last_commit: 38ceb77
git_last_commit_date: 2021-07-10 18:31:07 -0400 (Sat, 10 Jul 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CardinalWorkflows
Version: 1.25.1
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:CardinalWorkflows.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings CardinalWorkflows_1.25.1.tar.gz
StartedAt: 2021-10-21 12:09:27 -0400 (Thu, 21 Oct 2021)
EndedAt: 2021-10-21 12:11:06 -0400 (Thu, 21 Oct 2021)
EllapsedTime: 98.8 seconds
RetCode: 0
Status:   OK  
CheckDir: CardinalWorkflows.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:CardinalWorkflows.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings CardinalWorkflows_1.25.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/CardinalWorkflows.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CardinalWorkflows/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CardinalWorkflows’ version ‘1.25.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CardinalWorkflows’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 135.0Mb
  sub-directories of 1Mb or more:
    data  134.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
rcc-data      7.343  0.536   7.879
cardinal-data 6.745  0.448   7.194
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/CardinalWorkflows.Rcheck/00check.log’
for details.



Installation output

CardinalWorkflows.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL CardinalWorkflows
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘CardinalWorkflows’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CardinalWorkflows)

Tests output


Example timings

CardinalWorkflows.Rcheck/CardinalWorkflows-Ex.timings

nameusersystemelapsed
cardinal-data6.7450.4487.194
pig206-data3.4260.1443.570
rcc-data7.3430.5367.879