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This page was generated on 2021-06-17 12:05:48 -0400 (Thu, 17 Jun 2021).

INSTALL results for rsbml on riesling1

To the developers/maintainers of the rsbml package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rsbml.git to
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raw results

Package 1594/1993HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rsbml 2.51.0  (landing page)
Michael Lawrence
Snapshot Date: 2021-06-16 14:50:06 -0400 (Wed, 16 Jun 2021)
URL: https://git.bioconductor.org/packages/rsbml
Branch: master
Last Commit: e69392a
Last Changed Date: 2021-05-19 11:39:45 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64... NOT SUPPORTED ...

Summary

Package: rsbml
Version: 2.51.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/rsbml_2.51.0.tar.gz && rm -rf rsbml.buildbin-libdir && mkdir rsbml.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rsbml.buildbin-libdir rsbml_2.51.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL rsbml_2.51.0.zip && rm rsbml_2.51.0.tar.gz rsbml_2.51.0.zip
StartedAt: 2021-06-16 16:32:41 -0400 (Wed, 16 Jun 2021)
EndedAt: 2021-06-16 16:35:06 -0400 (Wed, 16 Jun 2021)
EllapsedTime: 144.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/rsbml_2.51.0.tar.gz && rm -rf rsbml.buildbin-libdir && mkdir rsbml.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rsbml.buildbin-libdir rsbml_2.51.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL rsbml_2.51.0.zip && rm rsbml_2.51.0.tar.gz rsbml_2.51.0.zip
###
##############################################################################
##############################################################################


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100  445k  100  445k    0     0  2667k      0 --:--:-- --:--:-- --:--:-- 2683k

install for i386

* installing *source* package 'rsbml' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c StringMap.c -o StringMap.o
In file included from C:/libsbml/i386/include/sbml/common/common.h:117,
                 from StringMap.c:52:
C:/libsbml/i386/include/sbml/util/util.h:369:7: warning: 'finite' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
   int finite (double d);
       ^~~~~~
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c check.c -o check.o
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c doc.c -o doc.o
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c dom.c -o dom.o
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c graph.c -o graph.o
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c io.c -o io.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c layoutWrappers.cpp -o layoutWrappers.o
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c mathml.c -o mathml.o
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c simulate.c -o simulate.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rsbml.dll tmp.def StringMap.o check.o doc.o dom.o graph.o init.o io.o layoutWrappers.o mathml.o simulate.o -LC:/libsbml/i386/bin -lsbml -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
mkdir -p D:/biocbuild/bbs-3.14-bioc/meat/rsbml.buildbin-libdir/00LOCK-rsbml/00new/rsbml/libs/i386
cp C:/libsbml/i386/bin/*.dll D:/biocbuild/bbs-3.14-bioc/meat/rsbml.buildbin-libdir/00LOCK-rsbml/00new/rsbml/libs//i386
installing to D:/biocbuild/bbs-3.14-bioc/meat/rsbml.buildbin-libdir/00LOCK-rsbml/00new/rsbml/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rsbml'
    finding HTML links ... done
    AlgebraicRule-class                     html  
    AssignmentRule-class                    html  
REDIRECT:topic	 type<-,AssignmentRule-method -> AssignmentRule-class.html [ FAIL ]
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    CVTerm-class                            html  
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    CubicBezier-class                       html  
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    Delay-class                             html  
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    Describable-class                       html  
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    Event-class                             html  
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    EventAssignment-class                   html  
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    Experiment-class                        html  
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    FunctionDefinition-class                html  
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    GraphicalObject-class                   html  
REDIRECT:topic	 boundingBox<-,GraphicalObject-method -> GraphicalObject-class.html [ FAIL ]
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    InitialAssignment-class                 html  
REDIRECT:topic	 symbol<- -> InitialAssignment-class.html [ FAIL ]
REDIRECT:topic	 math<-,InitialAssignment-method -> InitialAssignment-class.html [ FAIL ]
REDIRECT:topic	 symbol<-,InitialAssignment-method -> InitialAssignment-class.html [ FAIL ]
    KineticLaw-class                        html  
REDIRECT:topic	 math<-,KineticLaw-method -> KineticLaw-class.html [ FAIL ]
REDIRECT:topic	 math<- -> KineticLaw-class.html [ FAIL ]
REDIRECT:topic	 substanceUnits<-,KineticLaw-method -> KineticLaw-class.html [ FAIL ]
REDIRECT:topic	 substanceUnits<- -> KineticLaw-class.html [ FAIL ]
REDIRECT:topic	 timeUnits<-,KineticLaw-method -> KineticLaw-class.html [ FAIL ]
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    Layout-class                            html  
REDIRECT:topic	 additionalGraphicalObjects<-,Layout-method -> Layout-class.html [ FAIL ]
REDIRECT:topic	 additionalGraphicalObjects<- -> Layout-class.html [ FAIL ]
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    LineSegment-class                       html  
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    Model-class                             html  
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REDIRECT:topic	 compartmentTypes<- -> Model-class.html [ FAIL ]
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REDIRECT:topic	 initialAssignments<- -> Model-class.html [ FAIL ]
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    ModelCreator-class                      html  
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    ModelHistory-class                      html  
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    ModifierSpeciesReference-class          html  
    Parameter-class                         html  
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    Point-class                             html  
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    RateRule-class                          html  
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    Reaction-class                          html  
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    ReactionGlyph-class                     html  
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    Rule-class                              html  
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    SBML-class                              html  
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    SBMLDocument-class                      html  
    SBMLProblem-class                       html  
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    SBase-class                             html  
REDIRECT:topic	 annotation<-,SBase-method -> SBase-class.html [ FAIL ]
REDIRECT:topic	 annotation<- -> SBase-class.html [ FAIL ]
REDIRECT:topic	 metaId<-,SBase-method -> SBase-class.html [ FAIL ]
REDIRECT:topic	 metaId<- -> SBase-class.html [ FAIL ]
REDIRECT:topic	 notes<-,SBase-method -> SBase-class.html [ FAIL ]
REDIRECT:topic	 notes<- -> SBase-class.html [ FAIL ]
REDIRECT:topic	 cvTerms<- -> SBase-class.html [ FAIL ]
REDIRECT:topic	 cvTerms<-,SBase-method -> SBase-class.html [ FAIL ]
REDIRECT:topic	 sboTerm<- -> SBase-class.html [ FAIL ]
REDIRECT:topic	 sboTerm<-,SBase-method -> SBase-class.html [ FAIL ]
    SOSDesign-class                         html  
REDIRECT:topic	 reactions<-,SOSDesign-method -> SOSDesign-class.html [ FAIL ]
    SOSExperiment-class                     html  
    SOSProtocol-class                       html  
    SOSResult-class                         html  
    SOSSubject-class                        html  
    SimpleSpeciesReference-class            html  
REDIRECT:topic	 id<-,SimpleSpeciesReference-method -> SimpleSpeciesReference-class.html [ FAIL ]
REDIRECT:topic	 species<-,SimpleSpeciesReference-method -> SimpleSpeciesReference-class.html [ FAIL ]
    Species-class                           html  
REDIRECT:topic	 boundaryCondition<-,Species-method -> Species-class.html [ FAIL ]
REDIRECT:topic	 boundaryCondition<- -> Species-class.html [ FAIL ]
REDIRECT:topic	 charge<-,Species-method -> Species-class.html [ FAIL ]
REDIRECT:topic	 charge<- -> Species-class.html [ FAIL ]
REDIRECT:topic	 compartment<-,Species-method -> Species-class.html [ FAIL ]
REDIRECT:topic	 compartment<- -> Species-class.html [ FAIL ]
REDIRECT:topic	 constant<-,Species-method -> Species-class.html [ FAIL ]
REDIRECT:topic	 constant<- -> Species-class.html [ FAIL ]
REDIRECT:topic	 hasOnlySubstanceUnits<-,Species-method -> Species-class.html [ FAIL ]
REDIRECT:topic	 hasOnlySubstanceUnits<- -> Species-class.html [ FAIL ]
REDIRECT:topic	 initialAmount<-,Species-method -> Species-class.html [ FAIL ]
REDIRECT:topic	 initialAmount<- -> Species-class.html [ FAIL ]
REDIRECT:topic	 initialConcentration<-,Species-method -> Species-class.html [ FAIL ]
REDIRECT:topic	 initialConcentration<- -> Species-class.html [ FAIL ]
REDIRECT:topic	 spatialSizeUnits<-,Species-method -> Species-class.html [ FAIL ]
REDIRECT:topic	 spatialSizeUnits<- -> Species-class.html [ FAIL ]
REDIRECT:topic	 substanceUnits<-,Species-method -> Species-class.html [ FAIL ]
REDIRECT:topic	 id<-,Species-method -> Species-class.html [ FAIL ]
REDIRECT:topic	 name<-,Species-method -> Species-class.html [ FAIL ]
REDIRECT:topic	 units<-,Species-method -> Species-class.html [ FAIL ]
    SpeciesConcentrationRule-class          html  
REDIRECT:topic	 species<-,SpeciesConcentrationRule-method -> SpeciesConcentrationRule-class.html [ FAIL ]
    SpeciesGlyph-class                      html  
REDIRECT:topic	 species<-,SpeciesGlyph-method -> SpeciesGlyph-class.html [ FAIL ]
REDIRECT:topic	 species<- -> SpeciesGlyph-class.html [ FAIL ]
    SpeciesReference-class                  html  
REDIRECT:topic	 stoichiometry<-,SpeciesReference-method -> SpeciesReference-class.html [ FAIL ]
REDIRECT:topic	 stoichiometry<- -> SpeciesReference-class.html [ FAIL ]
REDIRECT:topic	 stoichiometryMath<-,SpeciesReference-method -> SpeciesReference-class.html [ FAIL ]
REDIRECT:topic	 stoichiometryMath<- -> SpeciesReference-class.html [ FAIL ]
    SpeciesReferenceGlyph-class             html  
REDIRECT:topic	 role<-,SpeciesReferenceGlyph-method -> SpeciesReferenceGlyph-class.html [ FAIL ]
REDIRECT:topic	 role<- -> SpeciesReferenceGlyph-class.html [ FAIL ]
REDIRECT:topic	 speciesGlyph<-,SpeciesReferenceGlyph-method -> SpeciesReferenceGlyph-class.html [ FAIL ]
REDIRECT:topic	 speciesGlyph<- -> SpeciesReferenceGlyph-class.html [ FAIL ]
REDIRECT:topic	 speciesReference<-,SpeciesReferenceGlyph-method -> SpeciesReferenceGlyph-class.html [ FAIL ]
REDIRECT:topic	 speciesReference<- -> SpeciesReferenceGlyph-class.html [ FAIL ]
REDIRECT:topic	 glyphCurve<-,SpeciesReferenceGlyph-method -> SpeciesReferenceGlyph-class.html [ FAIL ]
    SpeciesType-class                       html  
REDIRECT:topic	 id<-,SpeciesType-method -> SpeciesType-class.html [ FAIL ]
REDIRECT:topic	 name<-,SpeciesType-method -> SpeciesType-class.html [ FAIL ]
    StoichiometryMath-class                 html  
REDIRECT:topic	 math<-,StoichiometryMath-method -> StoichiometryMath-class.html [ FAIL ]
    TextGlyph-class                         html  
REDIRECT:topic	 graphicalObject<-,TextGlyph-method -> TextGlyph-class.html [ FAIL ]
REDIRECT:topic	 graphicalObject<- -> TextGlyph-class.html [ FAIL ]
REDIRECT:topic	 originOfText<-,TextGlyph-method -> TextGlyph-class.html [ FAIL ]
REDIRECT:topic	 originOfText<- -> TextGlyph-class.html [ FAIL ]
REDIRECT:topic	 text<-,TextGlyph-method -> TextGlyph-class.html [ FAIL ]
REDIRECT:topic	 text<- -> TextGlyph-class.html [ FAIL ]
    Trigger-class                           html  
REDIRECT:topic	 math<-,Trigger-method -> Trigger-class.html [ FAIL ]
    Unit-class                              html  
REDIRECT:topic	 exponent<-,Unit-method -> Unit-class.html [ FAIL ]
REDIRECT:topic	 exponent<- -> Unit-class.html [ FAIL ]
REDIRECT:topic	 kind<-,Unit-method -> Unit-class.html [ FAIL ]
REDIRECT:topic	 kind<- -> Unit-class.html [ FAIL ]
REDIRECT:topic	 multiplier<-,Unit-method -> Unit-class.html [ FAIL ]
REDIRECT:topic	 multiplier<- -> Unit-class.html [ FAIL ]
REDIRECT:topic	 offset<-,Unit-method -> Unit-class.html [ FAIL ]
REDIRECT:topic	 offset<- -> Unit-class.html [ FAIL ]
REDIRECT:topic	 unitScale<-,Unit-method -> Unit-class.html [ FAIL ]
REDIRECT:topic	 unitScale<- -> Unit-class.html [ FAIL ]
    UnitDefinition-class                    html  
REDIRECT:topic	 id<-,UnitDefinition-method -> UnitDefinition-class.html [ FAIL ]
REDIRECT:topic	 id<- -> UnitDefinition-class.html [ FAIL ]
REDIRECT:topic	 name<-,UnitDefinition-method -> UnitDefinition-class.html [ FAIL ]
REDIRECT:topic	 name<- -> UnitDefinition-class.html [ FAIL ]
REDIRECT:topic	 units<-,UnitDefinition-method -> UnitDefinition-class.html [ FAIL ]
REDIRECT:topic	 units<- -> UnitDefinition-class.html [ FAIL ]
    math                                    html  
    read                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'rsbml' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c StringMap.c -o StringMap.o
In file included from C:/libsbml/x64/include/sbml/common/common.h:117,
                 from StringMap.c:52:
C:/libsbml/x64/include/sbml/util/util.h:369:7: warning: 'finite' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
   int finite (double d);
       ^~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c check.c -o check.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c doc.c -o doc.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c dom.c -o dom.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c graph.c -o graph.o
graph.c: In function 'rsbml_build_graph':
graph.c:55:57: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
     StringMap_put(id_map, CHAR(STRING_ELT(r_nodes, i)), (void *)i);
                                                         ^
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c io.c -o io.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c layoutWrappers.cpp -o layoutWrappers.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c mathml.c -o mathml.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.14-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c simulate.c -o simulate.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rsbml.dll tmp.def StringMap.o check.o doc.o dom.o graph.o init.o io.o layoutWrappers.o mathml.o simulate.o -LC:/libsbml/x64/bin -lsbml -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
mkdir -p D:/biocbuild/bbs-3.14-bioc/meat/rsbml.buildbin-libdir/rsbml/libs/x64
cp C:/libsbml/x64/bin/*.dll D:/biocbuild/bbs-3.14-bioc/meat/rsbml.buildbin-libdir/rsbml/libs//x64
installing to D:/biocbuild/bbs-3.14-bioc/meat/rsbml.buildbin-libdir/rsbml/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rsbml' as rsbml_2.51.0.zip
* DONE (rsbml)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'rsbml' successfully unpacked and MD5 sums checked