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CHECK results for ppiStats on riesling1

This page was generated on 2021-06-16 12:05:11 -0400 (Wed, 16 Jun 2021).

Package 1385/1993HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ppiStats 1.59.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-06-15 14:50:06 -0400 (Tue, 15 Jun 2021)
URL: https://git.bioconductor.org/packages/ppiStats
Branch: master
Last Commit: 4917bca
Last Changed Date: 2021-05-19 11:38:18 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  NO, package depends on 'ScISI' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
To the developers/maintainers of the ppiStats package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ppiStats.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

Summary

Package: ppiStats
Version: 1.59.0
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ppiStats.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ppiStats_1.59.0.tar.gz
StartedAt: 2021-06-16 01:21:07 -0400 (Wed, 16 Jun 2021)
EndedAt: 2021-06-16 01:23:45 -0400 (Wed, 16 Jun 2021)
EllapsedTime: 157.3 seconds
RetCode: 0
Status:   OK   
CheckDir: ppiStats.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ppiStats.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ppiStats_1.59.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.14-bioc/meat/ppiStats.Rcheck'
* using R version 4.1.0 (2021-05-18)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ppiStats/DESCRIPTION' ... OK
* this is package 'ppiStats' version '1.59.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ppiStats' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'lattice'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'ScISI' 'ppiData'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.14-bioc/meat/ppiStats.Rcheck/00check.log'
for details.



Installation output

ppiStats.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ppiStats_1.59.0.tar.gz && rm -rf ppiStats.buildbin-libdir && mkdir ppiStats.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ppiStats.buildbin-libdir ppiStats_1.59.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ppiStats_1.59.0.zip && rm ppiStats_1.59.0.tar.gz ppiStats_1.59.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 1016k    0  1136    0     0  22274      0  0:00:46 --:--:--  0:00:46 21846
100 1016k  100 1016k    0     0  3310k      0 --:--:-- --:--:-- --:--:-- 3300k

install for i386

* installing *source* package 'ppiStats' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ppiStats'
    finding HTML links ... done
    assessSymmetry                          html  
    bpMatrix                                html  
    calcInOutDegStats                       html  
    createSummaryTables                     html  
    degreeEstimates                         html  
    estErrProbMethodOfMoments               html  
    estimateCCMErrorRates                   html  
    estimatePPIErrorRates                   html  
    findAdjacent                            html  
    genBPGraph                              html  
    hgParams                                html  
    hgTests                                 html  
    idProteinErrorType                      html  
    idProteinType                           html  
    inOutScatterCharts                      html  
    nullDistDoublyTestedEdges               html  
    separateExptBySize                      html  
    twPERM                                  html  
    viabilityCharts                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ppiStats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ppiStats' as ppiStats_1.59.0.zip
* DONE (ppiStats)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'ppiStats' successfully unpacked and MD5 sums checked

Tests output


Example timings

ppiStats.Rcheck/examples_i386/ppiStats-Ex.timings

nameusersystemelapsed
assessSymmetry1.890.172.06
bpMatrix0.520.300.82
calcInOutDegStats000
createSummaryTables0.120.000.13
degreeEstimates000
estErrProbMethodOfMoments000
estimateCCMErrorRates1.110.141.25
estimatePPIErrorRates2.470.122.59
genBPGraph0.110.020.13
idProteinErrorType1.260.201.46
idProteinType0.000.020.02
inOutScatterCharts000
nullDistDoublyTestedEdges0.110.060.17
twPERM000
viabilityCharts0.140.020.16

ppiStats.Rcheck/examples_x64/ppiStats-Ex.timings

nameusersystemelapsed
assessSymmetry1.950.212.15
bpMatrix0.570.250.82
calcInOutDegStats0.010.000.01
createSummaryTables0.130.000.13
degreeEstimates000
estErrProbMethodOfMoments000
estimateCCMErrorRates1.060.121.18
estimatePPIErrorRates2.340.132.47
genBPGraph0.110.010.13
idProteinErrorType1.200.241.44
idProteinType0.020.000.02
inOutScatterCharts000
nullDistDoublyTestedEdges0.090.060.15
twPERM000
viabilityCharts0.120.030.16