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This page was generated on 2021-06-19 12:06:00 -0400 (Sat, 19 Jun 2021).

INSTALL results for ontoProc on riesling1

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raw results

Package 1280/1993HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ontoProc 1.15.0  (landing page)
VJ Carey
Snapshot Date: 2021-06-18 14:50:08 -0400 (Fri, 18 Jun 2021)
URL: https://git.bioconductor.org/packages/ontoProc
Branch: master
Last Commit: ad76af3
Last Changed Date: 2021-05-19 12:31:28 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  NO, package depends on 'Rgraphviz' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ontoProc
Version: 1.15.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ontoProc_1.15.0.tar.gz && rm -rf ontoProc.buildbin-libdir && mkdir ontoProc.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ontoProc.buildbin-libdir ontoProc_1.15.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ontoProc_1.15.0.zip && rm ontoProc_1.15.0.tar.gz ontoProc_1.15.0.zip
StartedAt: 2021-06-18 17:03:34 -0400 (Fri, 18 Jun 2021)
EndedAt: 2021-06-18 17:06:16 -0400 (Fri, 18 Jun 2021)
EllapsedTime: 161.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ontoProc_1.15.0.tar.gz && rm -rf ontoProc.buildbin-libdir && mkdir ontoProc.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ontoProc.buildbin-libdir ontoProc_1.15.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ontoProc_1.15.0.zip && rm ontoProc_1.15.0.tar.gz ontoProc_1.15.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 12 40.7M   12 5231k    0     0  6802k      0  0:00:06 --:--:--  0:00:06 6802k
 36 40.7M   36 14.8M    0     0  8570k      0  0:00:04  0:00:01  0:00:03 8565k
 65 40.7M   65 26.9M    0     0  9945k      0  0:00:04  0:00:02  0:00:02 9941k
100 40.7M  100 40.7M    0     0  10.8M      0  0:00:03  0:00:03 --:--:-- 10.8M

install for i386

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'ontoProc/vignettes/ontoProc.Rmd' to 'ontoProc/README.md'
* installing *source* package 'ontoProc' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ontoProc'
    finding HTML links ... done
    CLfeats                                 html  
    PROSYM                                  html  
    TermSet-class                           html  
    allGOterms                              html  
    bind_formal_tags                        html  
    c-TermSet-method                        html  
    cellTypeToGO                            html  
    cleanCLOnames                           html  
    common_classes                          html  
    connect_classes                         html  
    ctmarks                                 html  
    cyclicSigset                            html  
    demoApp                                 html  
    dropStop                                html  
    fastGrep                                html  
    findCommonAncestors                     html  
    finding level-2 HTML links ... done

    getCellOnto                             html  
    getLeavesFromTerm                       html  
    humrna                                  html  
    improveNodes                            html  
    ldfToTerms                              html  
    liberalMap                              html  
    makeSelectInput                         html  
    make_graphNEL_from_ontology_plot        html  
    map2prose                               html  
    mapOneNaive                             html  
    minicorpus                              html  
    nomenCheckup                            html  
    onto_plot2                              html  
    onto_roots                              html  
    packDesc2019                            html  
    recognizedPredicates                    html  
    secLevGen                               html  
    selectFromMap                           html  
    seur3kTab                               html  
    siblings_TAG                            html  
    stopWords                               html  
    subset_descendants                      html  
    sym2CellOnto                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'ontoProc/vignettes/ontoProc.Rmd' to 'ontoProc/README.md'
* installing *source* package 'ontoProc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ontoProc' as ontoProc_1.15.0.zip
* DONE (ontoProc)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'ontoProc' successfully unpacked and MD5 sums checked