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This page was generated on 2021-07-24 12:06:04 -0400 (Sat, 24 Jul 2021).

CHECK results for nempi on riesling1

To the developers/maintainers of the nempi package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nempi.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1238/2008HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nempi 1.1.1  (landing page)
Martin Pirkl
Snapshot Date: 2021-07-23 14:50:08 -0400 (Fri, 23 Jul 2021)
URL: https://git.bioconductor.org/packages/nempi
Branch: master
Last Commit: 3c84fdb
Last Changed Date: 2021-05-28 08:55:44 -0400 (Fri, 28 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  NO, package depends on 'mnem' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: nempi
Version: 1.1.1
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:nempi.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings nempi_1.1.1.tar.gz
StartedAt: 2021-07-24 01:25:51 -0400 (Sat, 24 Jul 2021)
EndedAt: 2021-07-24 01:28:13 -0400 (Sat, 24 Jul 2021)
EllapsedTime: 141.6 seconds
RetCode: 0
Status:   OK  
CheckDir: nempi.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:nempi.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings nempi_1.1.1.tar.gz
###
##############################################################################
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* using log directory 'D:/biocbuild/bbs-3.14-bioc/meat/nempi.Rcheck'
* using R version 4.1.0 (2021-05-18)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'nempi/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'nempi' version '1.1.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'nempi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

nempi.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/nempi_1.1.1.tar.gz && rm -rf nempi.buildbin-libdir && mkdir nempi.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nempi.buildbin-libdir nempi_1.1.1.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL nempi_1.1.1.zip && rm nempi_1.1.1.tar.gz nempi_1.1.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 56640  100 56640    0     0   558k      0 --:--:-- --:--:-- --:--:--  564k

install for i386

* installing *source* package 'nempi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'nempi'
    finding HTML links ... done
    classpi                                 html  
    nempi                                   html  
    nempibs                                 html  
    pifit                                   html  
    plot.nempi                              html  
    plotConvergence.nempi                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'nempi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'nempi' as nempi_1.1.1.zip
* DONE (nempi)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'nempi' successfully unpacked and MD5 sums checked

Tests output

nempi.Rcheck/tests_i386/runTests.Rout


R version 4.1.0 (2021-05-18) -- "Camp Pontanezen"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("nempi")


RUNIT TEST PROTOCOL -- Sat Jul 24 01:27:50 2021 
*********************************************** 
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
nempi RUnit Tests - 0 test functions, 0 errors, 0 failures
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   3.01    0.31    3.31 

nempi.Rcheck/tests_x64/runTests.Rout


R version 4.1.0 (2021-05-18) -- "Camp Pontanezen"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("nempi")


RUNIT TEST PROTOCOL -- Sat Jul 24 01:27:53 2021 
*********************************************** 
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
nempi RUnit Tests - 0 test functions, 0 errors, 0 failures
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   3.03    0.35    3.37 

Example timings

nempi.Rcheck/examples_i386/nempi-Ex.timings

nameusersystemelapsed
classpi2.170.112.28
nempi0.250.050.30
nempibs2.720.002.72
pifit1.310.001.31
plot.nempi1.270.001.26
plotConvergence.nempi0.310.000.32

nempi.Rcheck/examples_x64/nempi-Ex.timings

nameusersystemelapsed
classpi2.220.142.35
nempi0.330.000.33
nempibs2.880.002.88
pifit1.460.001.47
plot.nempi1.680.001.67
plotConvergence.nempi0.560.000.56