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This page was generated on 2021-07-24 12:06:03 -0400 (Sat, 24 Jul 2021).

INSTALL results for monocle on riesling1

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raw results

Package 1156/2008HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
monocle 2.21.0  (landing page)
Cole Trapnell
Snapshot Date: 2021-07-23 14:50:08 -0400 (Fri, 23 Jul 2021)
URL: https://git.bioconductor.org/packages/monocle
Branch: master
Last Commit: 7da9efc
Last Changed Date: 2021-05-19 12:05:11 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  ERROR    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  ERROR    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: monocle
Version: 2.21.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/monocle_2.21.0.tar.gz && rm -rf monocle.buildbin-libdir && mkdir monocle.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=monocle.buildbin-libdir monocle_2.21.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL monocle_2.21.0.zip && rm monocle_2.21.0.tar.gz monocle_2.21.0.zip
StartedAt: 2021-07-23 17:32:22 -0400 (Fri, 23 Jul 2021)
EndedAt: 2021-07-23 17:34:57 -0400 (Fri, 23 Jul 2021)
EllapsedTime: 155.2 seconds
RetCode: 1
Status:   ERROR  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/monocle_2.21.0.tar.gz && rm -rf monocle.buildbin-libdir && mkdir monocle.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=monocle.buildbin-libdir monocle_2.21.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL monocle_2.21.0.zip && rm monocle_2.21.0.tar.gz monocle_2.21.0.zip
###
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 9401k    0 14637    0     0   190k      0  0:00:49 --:--:--  0:00:49  188k
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100 9401k  100 9401k    0     0  7420k      0  0:00:01  0:00:01 --:--:-- 7420k

install for i386

* installing *source* package 'monocle' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c clustering.cpp -o clustering.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o monocle.dll tmp.def RcppExports.o clustering.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/monocle.buildbin-libdir/00LOCK-monocle/00new/monocle/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error: object 'clusterApply' is not exported by 'namespace:BiocGenerics'
Execution halted
ERROR: lazy loading failed for package 'monocle'
* removing 'D:/biocbuild/bbs-3.14-bioc/meat/monocle.buildbin-libdir/monocle'