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This page was generated on 2021-07-24 12:05:32 -0400 (Sat, 24 Jul 2021).

INSTALL results for monocle on nebbiolo2

To the developers/maintainers of the monocle package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/monocle.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1156/2008HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
monocle 2.21.0  (landing page)
Cole Trapnell
Snapshot Date: 2021-07-23 14:50:08 -0400 (Fri, 23 Jul 2021)
URL: https://git.bioconductor.org/packages/monocle
Branch: master
Last Commit: 7da9efc
Last Changed Date: 2021-05-19 12:05:11 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  ERROR    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  ERROR    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: monocle
Version: 2.21.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL monocle
StartedAt: 2021-07-23 16:12:46 -0400 (Fri, 23 Jul 2021)
EndedAt: 2021-07-23 16:12:58 -0400 (Fri, 23 Jul 2021)
EllapsedTime: 12.0 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL monocle
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘monocle’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c clustering.cpp -o clustering.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o monocle.so RcppExports.o clustering.o -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-monocle/00new/monocle/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error: object ‘clusterApply’ is not exported by 'namespace:BiocGenerics'
Execution halted
ERROR: lazy loading failed for package ‘monocle’
* removing ‘/home/biocbuild/bbs-3.14-bioc/R/library/monocle’
* restoring previous ‘/home/biocbuild/bbs-3.14-bioc/R/library/monocle’