Back to Multiple platform build/check report for BioC 3.14
ABCDEFG[H]IJKLMNOPQRSTUVWXYZ

This page was generated on 2021-06-21 12:05:37 -0400 (Mon, 21 Jun 2021).

CHECK results for hypergraph on riesling1

To the developers/maintainers of the hypergraph package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/hypergraph.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 860/1993HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
hypergraph 1.65.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-06-20 14:50:05 -0400 (Sun, 20 Jun 2021)
URL: https://git.bioconductor.org/packages/hypergraph
Branch: master
Last Commit: ad71314
Last Changed Date: 2021-05-19 11:35:52 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: hypergraph
Version: 1.65.0
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:hypergraph.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings hypergraph_1.65.0.tar.gz
StartedAt: 2021-06-21 00:42:58 -0400 (Mon, 21 Jun 2021)
EndedAt: 2021-06-21 00:45:44 -0400 (Mon, 21 Jun 2021)
EllapsedTime: 166.2 seconds
RetCode: 0
Status:   OK  
CheckDir: hypergraph.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:hypergraph.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings hypergraph_1.65.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.14-bioc/meat/hypergraph.Rcheck'
* using R version 4.1.0 (2021-05-18)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hypergraph/DESCRIPTION' ... OK
* this is package 'hypergraph' version '1.65.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'hypergraph' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'hypergraph_unit_tests.R'
 OK
** running tests for arch 'x64' ...
  Running 'hypergraph_unit_tests.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

hypergraph.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/hypergraph_1.65.0.tar.gz && rm -rf hypergraph.buildbin-libdir && mkdir hypergraph.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hypergraph.buildbin-libdir hypergraph_1.65.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL hypergraph_1.65.0.zip && rm hypergraph_1.65.0.tar.gz hypergraph_1.65.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 13  8332   13  1140    0     0  22800      0 --:--:-- --:--:-- --:--:-- 22352
100  8332  100  8332    0     0   162k      0 --:--:-- --:--:-- --:--:--  159k

install for i386

* installing *source* package 'hypergraph' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'hypergraph'
    finding HTML links ... done
    DirectedHyperedge-class                 html  
    DirectedHyperedge                       html  
    Hyperedge-class                         html  
REDIRECT:topic	 label<- -> Hyperedge-class.html [ FAIL ]
REDIRECT:topic	 label<-,Hyperedge,character-method -> Hyperedge-class.html [ FAIL ]
    Hyperedge                               html  
    Hypergraph-class                        html  
    Hypergraph                              html  
    kCores                                  html  
    l2hel                                   html  
    vCover                                  html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'hypergraph' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hypergraph' as hypergraph_1.65.0.zip
* DONE (hypergraph)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'hypergraph' successfully unpacked and MD5 sums checked

Tests output

hypergraph.Rcheck/tests_i386/hypergraph_unit_tests.Rout


R version 4.1.0 (2021-05-18) -- "Camp Pontanezen"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("hypergraph")

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min



RUNIT TEST PROTOCOL -- Mon Jun 21 00:43:22 2021 
*********************************************** 
Number of test functions: 12 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
hypergraph RUnit Tests - 12 test functions, 0 errors, 0 failures
Number of test functions: 12 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   0.68    0.09    0.78 

hypergraph.Rcheck/tests_x64/hypergraph_unit_tests.Rout


R version 4.1.0 (2021-05-18) -- "Camp Pontanezen"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("hypergraph")

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min



RUNIT TEST PROTOCOL -- Mon Jun 21 00:43:23 2021 
*********************************************** 
Number of test functions: 12 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
hypergraph RUnit Tests - 12 test functions, 0 errors, 0 failures
Number of test functions: 12 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   0.43    0.10    0.54 

Example timings

hypergraph.Rcheck/examples_i386/hypergraph-Ex.timings

nameusersystemelapsed
DirectedHyperedge-class000
Hyperedge-class000
Hypergraph-class000
kCores000
l2hel000
vCover000

hypergraph.Rcheck/examples_x64/hypergraph-Ex.timings

nameusersystemelapsed
DirectedHyperedge-class000
Hyperedge-class000
Hypergraph-class000
kCores000
l2hel000
vCover0.020.000.01