Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2021-06-19 12:05:51 -0400 (Sat, 19 Jun 2021).

BUILD BIN results for graph on riesling1

To the developers/maintainers of the graph package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graph.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 783/1993HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
graph 1.71.2  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-06-18 14:50:08 -0400 (Fri, 18 Jun 2021)
URL: https://git.bioconductor.org/packages/graph
Branch: master
Last Commit: f73871a
Last Changed Date: 2021-05-27 12:04:35 -0400 (Thu, 27 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: graph
Version: 1.71.2
Command: rm -rf graph.buildbin-libdir && mkdir graph.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=graph.buildbin-libdir graph_1.71.2.tar.gz
StartedAt: 2021-06-19 04:21:38 -0400 (Sat, 19 Jun 2021)
EndedAt: 2021-06-19 04:25:36 -0400 (Sat, 19 Jun 2021)
EllapsedTime: 238.3 seconds
RetCode: 0
Status:   OK  
PackageFile: graph_1.71.2.zip
PackageFileSize: 1.746 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf graph.buildbin-libdir && mkdir graph.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=graph.buildbin-libdir graph_1.71.2.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'graph' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c graph.c -o graph.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
mv graph.dll BioC_graph.dll
installing to D:/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'graph'
    finding HTML links ... done
    DFS                                     html  
    IMCA                                    html  
    MAPKsig                                 html  
    MultiGraph-class                        html  
REDIRECT:topic	 nodeData<-,MultiGraph,character,character-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 nodeData<-,MultiGraph,missing,character-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeDataDefaults<- -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeDataDefaults<-,MultiGraph,character,character,ANY-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeDataDefaults<-,MultiGraph,character,missing,list-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,MultiGraph,character,ANY-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,MultiGraph,missing,list-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeData<- -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeData<-,MultiGraph,character,character,character,character-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeData<-,MultiGraph,character,character,missing,character-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeData<-,MultiGraph,character,missing,character,character-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeData<-,MultiGraph,character,missing,missing,character-method -> MultiGraph-class.html [ FAIL ]
    acc-methods                             html  
    addEdge                                 html  
    addNode                                 html  
    adj-methods                             html  
    adjacencyMatrix                         html  
    apoptosisGraph                          html  
    attrData-class                          html  
REDIRECT:topic	 attrDataItem<-,attrData,character,character-method -> attrData-class.html [ FAIL ]
REDIRECT:topic	 attrDefaults<-,attrData,character,ANY-method -> attrData-class.html [ FAIL ]
REDIRECT:topic	 attrDefaults<-,attrData,missing,list-method -> attrData-class.html [ FAIL ]
REDIRECT:topic	 names<-,attrData,character-method -> attrData-class.html [ FAIL ]
REDIRECT:topic	 removeAttrDataItem<- -> attrData-class.html [ FAIL ]
REDIRECT:topic	 removeAttrDataItem<-,attrData,character,NULL-method -> attrData-class.html [ FAIL ]
    attrDataItem-methods                    html  
REDIRECT:topic	 attrDataItem<--methods -> attrDataItem-methods.html [ FAIL ]
REDIRECT:topic	 attrDataItem<- -> attrDataItem-methods.html [ FAIL ]
    attrDefaults-methods                    html  
REDIRECT:topic	 attrDefaults<--methods -> attrDefaults-methods.html [ FAIL ]
REDIRECT:topic	 attrDefaults<- -> attrDefaults-methods.html [ FAIL ]
    aveNumEdges                             html  
    biocRepos                               html  
    boundary                                html  
    calcProb                                html  
    calcSumProb                             html  
    clearNode                               html  
    clusterGraph-class                      html  
REDIRECT:topic	 nodes<-,clusterGraph,character-method -> clusterGraph-class.html [ FAIL ]
    clusteringCoefficient-methods           html  
    combineNodes                            html  
    defunct                                 html  
    distGraph-class                         html  
    duplicatedEdges                         html  
    edgeData-methods                        html  
REDIRECT:topic	 edgeData<--methods -> edgeData-methods.html [ FAIL ]
REDIRECT:topic	 edgeData<- -> edgeData-methods.html [ FAIL ]
    edgeDataDefaults-methods                html  
REDIRECT:topic	 edgeDataDefaults<--methods -> edgeDataDefaults-methods.html [ FAIL ]
REDIRECT:topic	 edgeDataDefaults<- -> edgeDataDefaults-methods.html [ FAIL ]
    edgeMatrix                              html  
    edgeSets                                html  
    edgeWeights                             html  
    fromGXL-methods                         html  
    graph-class                             html  
REDIRECT:topic	 edgeDataDefaults<-,graph,missing,list-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeDataDefaults<-,graph,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeDataDefaults<-,graph,character,ANY-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graph,character,character,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graph,character,missing,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graph,missing,character,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graph,character,character,character,ANY-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graph,character,missing,character,ANY-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graph,missing,character,character,ANY-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgemode<- -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgemode<-,graph,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,graph,missing,list-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,graph,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,graph,character,ANY-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 nodeData<-,graph,character,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 nodeData<-,graph,missing,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 nodes<-,graph,character-method -> graph-class.html [ FAIL ]
    graph2SparseM                           html  
    graphAM-class                           html  
REDIRECT:topic	 nodes<-,graphAM,character-method -> graphAM-class.html [ FAIL ]
    graphBAM-class                          html  
REDIRECT:topic	 edgemode<-,graphBAM,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,character,character,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,missing,character,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,character,missing,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,missing,missing,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,character,character,character,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,missing,character,character,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,character,missing,character,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,missing,missing,character,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeDataDefaults<-,graphBAM,character,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeDataDefaults<-,graphBAM,missing,list-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,graphBAM,missing,list-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 nodes<-,graphBAM,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,graphBAM,character,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,graphBAM,missing,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 nodeData<-,graphBAM,character,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 nodeData<-,graphBAM,missing,character-method -> graphBAM-class.html [ FAIL ]
    graphExamples                           html  
    graphNEL-class                          html  
REDIRECT:topic	 nodes<- -> graphNEL-class.html [ FAIL ]
REDIRECT:topic	 nodes<-,graphNEL,character-method -> graphNEL-class.html [ FAIL ]
    inEdges                                 html  
    internal                                html  
    isAdjacent-methods                      html  
    isDirected-methods                      html  
    leaves                                  html  
    listEdges                               html  
    matrix2Graph                            html  
    mostEdges                               html  
    multigraph                              html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/multiGraph-class.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/show,multiGraph-method.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/isDirected,multiGraph-method.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/nodes,multiGraph-method.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/numNodes,multiGraph-method.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/edges,multiGraph-method.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/numEdges,multiGraph-method.html
    nodeData-methods                        html  
REDIRECT:topic	 nodeData<--methods -> nodeData-methods.html [ FAIL ]
REDIRECT:topic	 nodeData<- -> nodeData-methods.html [ FAIL ]
    nodeDataDefaults-methods                html  
REDIRECT:topic	 nodeDataDefaults<--methods -> nodeDataDefaults-methods.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<- -> nodeDataDefaults-methods.html [ FAIL ]
    numNoEdges                              html  
    pancrCaIni                              html  
    randomEGraph                            html  
    randomGraph                             html  
    randomNodeGraph                         html  
    removeEdge                              html  
    removeNode                              html  
    renderInfo-class                        html  
REDIRECT:topic	 edgeRenderInfo<- -> renderInfo-class.html [ FAIL ]
REDIRECT:topic	 nodeRenderInfo<- -> renderInfo-class.html [ FAIL ]
REDIRECT:topic	 parRenderInfo<- -> renderInfo-class.html [ FAIL ]
REDIRECT:topic	 graphRenderInfo<- -> renderInfo-class.html [ FAIL ]
    reverseEdgeDirections                   html  
    settings                                html  
    simpleEdge-class                        html  
    standardLabeling                        html  
    subGraph                                html  
    toDotR-methods                          html  
    toDotWithRI                             html  
    ugraph                                  html  
    validGraph                              html  
    write.tlp                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'graph' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c graph.c -o graph.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
mv graph.dll BioC_graph.dll
installing to D:/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/graph/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'graph' as graph_1.71.2.zip
* DONE (graph)