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This page was generated on 2021-06-22 12:05:50 -0400 (Tue, 22 Jun 2021).

BUILD BIN results for chimeraviz on riesling1

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raw results

Package 281/1993HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chimeraviz 1.19.0  (landing page)
Stian Lågstad
Snapshot Date: 2021-06-21 14:50:06 -0400 (Mon, 21 Jun 2021)
URL: https://git.bioconductor.org/packages/chimeraviz
Branch: master
Last Commit: b410af5
Last Changed Date: 2021-05-19 12:24:46 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  NO, package depends on 'Rgraphviz' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: chimeraviz
Version: 1.19.0
Command: rm -rf chimeraviz.buildbin-libdir && mkdir chimeraviz.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chimeraviz.buildbin-libdir chimeraviz_1.19.0.tar.gz
StartedAt: 2021-06-22 03:28:09 -0400 (Tue, 22 Jun 2021)
EndedAt: 2021-06-22 03:32:06 -0400 (Tue, 22 Jun 2021)
EllapsedTime: 237.0 seconds
RetCode: 0
Status:   OK  
PackageFile: chimeraviz_1.19.0.zip
PackageFileSize: 3.52 MiB

Command output

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###
### Running command:
###
###   rm -rf chimeraviz.buildbin-libdir && mkdir chimeraviz.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chimeraviz.buildbin-libdir chimeraviz_1.19.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'chimeraviz' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'chimeraviz'
    finding HTML links ... done
    Fusion-class                            html  
    PartnerGene-class                       html  
    add_fusion_reads_alignment              html  
    chimeraviz-internals-fusions_to_gene_label_data
                                            html  
    chimeraviz-internals-fusions_to_link_data
                                            html  
    chimeraviz-internals-scaleListToInterval
                                            html  
    chimeraviz                              html  
    create_fusion_report                    html  
    decide_transcript_category              html  
    down_shift                              html  
    downstream_partner_gene                 html  
REDIRECT:topic	 downstream_partner_gene<- -> downstream_partner_gene.html [ FAIL ]
REDIRECT:topic	 downstream_partner_gene<-,Fusion-method -> downstream_partner_gene.html [ FAIL ]
    fetch_reads_from_fastq                  html  
    fusion_spanning_reads_count             html  
    fusion_split_reads_count                html  
    fusion_to_data_frame                    html  
    get_ensembl_ids                         html  
    get_fusion_by_chromosome                html  
    get_fusion_by_gene_name                 html  
    get_fusion_by_id                        html  
    get_transcripts_ensembl_db              html  
    import_aeron                            html  
    import_chimpipe                         html  
    import_defuse                           html  
    import_ericscript                       html  
    import_function_non_ucsc                html  
    import_fusioncatcher                    html  
    import_fusionmap                        html  
    import_infusion                         html  
    import_jaffa                            html  
    import_oncofuse                         html  
    import_prada                            html  
    import_soapfuse                         html  
    import_squid                            html  
    import_starfusion                       html  
    partner_gene_ensembl_id                 html  
REDIRECT:topic	 partner_gene_ensembl_id<- -> partner_gene_ensembl_id.html [ FAIL ]
REDIRECT:topic	 partner_gene_ensembl_id<-,PartnerGene-method -> partner_gene_ensembl_id.html [ FAIL ]
    partner_gene_junction_sequence          html  
    plot_circle                             html  
    plot_fusion                             html  
    plot_fusion_reads                       html  
    plot_fusion_transcript                  html  
    plot_fusion_transcript_with_protein_domain
                                            html  
    plot_fusion_transcripts_graph           html  
    plot_transcripts                        html  
    raw_Homo_sapiens.GRCh37.74              html  
    raw_chimpipe                            html  
    raw_cytobandhg19                        html  
    raw_cytobandhg38                        html  
    raw_defuse                              html  
    raw_ericscript                          html  
    raw_fusion5267proteindomains            html  
    raw_fusion5267reads                     html  
    raw_fusion5267readsBedGraph             html  
    raw_fusioncatcher                       html  
    raw_fusionmap                           html  
    raw_infusion                            html  
    raw_jaffa                               html  
    raw_oncofuse                            html  
    raw_prada                               html  
    raw_soapfuse                            html  
    raw_starfusion                          html  
    select_transcript                       html  
    show-Fusion-method                      html  
    show-PartnerGene-method                 html  
    split_on_utr_and_add_feature            html  
    upstream_partner_gene                   html  
REDIRECT:topic	 upstream_partner_gene<- -> upstream_partner_gene.html [ FAIL ]
REDIRECT:topic	 upstream_partner_gene<-,Fusion-method -> upstream_partner_gene.html [ FAIL ]
    write_fusion_reference                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'chimeraviz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'chimeraviz' as chimeraviz_1.19.0.zip
* DONE (chimeraviz)