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This page was generated on 2021-06-22 12:05:50 -0400 (Tue, 22 Jun 2021).

INSTALL results for categoryCompare on riesling1

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raw results

Package 239/1993HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
categoryCompare 1.37.1  (landing page)
Robert M. Flight
Snapshot Date: 2021-06-21 14:50:06 -0400 (Mon, 21 Jun 2021)
URL: https://git.bioconductor.org/packages/categoryCompare
Branch: master
Last Commit: 1da4bb2
Last Changed Date: 2021-06-17 14:46:47 -0400 (Thu, 17 Jun 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  NO, package depends on 'GOstats' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: categoryCompare
Version: 1.37.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/categoryCompare_1.37.1.tar.gz && rm -rf categoryCompare.buildbin-libdir && mkdir categoryCompare.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=categoryCompare.buildbin-libdir categoryCompare_1.37.1.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL categoryCompare_1.37.1.zip && rm categoryCompare_1.37.1.tar.gz categoryCompare_1.37.1.zip
StartedAt: 2021-06-21 17:34:37 -0400 (Mon, 21 Jun 2021)
EndedAt: 2021-06-21 17:37:12 -0400 (Mon, 21 Jun 2021)
EllapsedTime: 155.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/categoryCompare_1.37.1.tar.gz && rm -rf categoryCompare.buildbin-libdir && mkdir categoryCompare.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=categoryCompare.buildbin-libdir categoryCompare_1.37.1.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL categoryCompare_1.37.1.zip && rm categoryCompare_1.37.1.tar.gz categoryCompare_1.37.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1767k  100 1767k    0     0  5259k      0 --:--:-- --:--:-- --:--:-- 5259k

install for i386

* installing *source* package 'categoryCompare' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: ... may be used in an incorrect context 
** help
*** installing help indices
  converting help for package 'categoryCompare'
    finding HTML links ... done
    GENccEnrichResult-class                 html  
REDIRECT:topic	 graphType<-,GENccEnrichResult-method -> GENccEnrichResult-class.html [ FAIL ]
    finding level-2 HTML links ... done

    HyperGParamsCC-class                    html  
REDIRECT:topic	 fdr<-,HyperGParamsCC-method -> HyperGParamsCC-class.html [ FAIL ]
    HyperGResultCC-class                    html  
REDIRECT:topic	 pvalueCutoff<-,HyperGResultCC-method -> HyperGResultCC-class.html [ FAIL ]
REDIRECT:topic	 pvalueType<-,HyperGResultCC-method -> HyperGResultCC-class.html [ FAIL ]
REDIRECT:topic	 minCount<-,HyperGResultCC-method -> HyperGResultCC-class.html [ FAIL ]
    breakEdges-methods                      html  
    categoryCompare-package                 html  
    ccCompare                               html  
    ccCompareCollection-class               html  
    ccCompareGeneric-methods                html  
    ccCompareResult-class                   html  
    ccData                                  html  
    ccEnrich                                html  
    ccEnrichCollection-class                html  
REDIRECT:topic	 pvalueCutoff<-,ccEnrichCollection-method -> ccEnrichCollection-class.html [ FAIL ]
REDIRECT:topic	 pvalueType<-,ccEnrichCollection-method -> ccEnrichCollection-class.html [ FAIL ]
REDIRECT:topic	 minCount<-,ccEnrichCollection-method -> ccEnrichCollection-class.html [ FAIL ]
REDIRECT:topic	 graphType<-,ccEnrichCollection-method -> ccEnrichCollection-class.html [ FAIL ]
    ccEnrichResult-class                    html  
REDIRECT:topic	 pvalueCutoff<-,ccEnrichResult-method -> ccEnrichResult-class.html [ FAIL ]
REDIRECT:topic	 pvalueType<-,ccEnrichResult-method -> ccEnrichResult-class.html [ FAIL ]
REDIRECT:topic	 minCount<-,ccEnrichResult-method -> ccEnrichResult-class.html [ FAIL ]
REDIRECT:topic	 graphType<-,ccEnrichResult-method -> ccEnrichResult-class.html [ FAIL ]
    ccGeneList-class                        html  
REDIRECT:topic	 fdr<-,ccGeneList-method -> ccGeneList-class.html [ FAIL ]
REDIRECT:topic	 pvalueCutoff<-,ccGeneList-method -> ccGeneList-class.html [ FAIL ]
REDIRECT:topic	 ccType<-,ccGeneList-method -> ccGeneList-class.html [ FAIL ]
REDIRECT:topic	 ccType<- -> ccGeneList-class.html [ FAIL ]
    ccOptions-class                         html  
REDIRECT:topic	 compareColors<-,ccOptions-method -> ccOptions-class.html [ FAIL ]
REDIRECT:topic	 compareNames<-,ccOptions-method -> ccOptions-class.html [ FAIL ]
REDIRECT:topic	 listNames<-,ccOptions-method -> ccOptions-class.html [ FAIL ]
REDIRECT:topic	 outType<-,ccOptions-method -> ccOptions-class.html [ FAIL ]
REDIRECT:topic	 compareColors<- -> ccOptions-class.html [ FAIL ]
REDIRECT:topic	 compareNames<- -> ccOptions-class.html [ FAIL ]
REDIRECT:topic	 outType<- -> ccOptions-class.html [ FAIL ]
    ccOutCyt-methods                        html  
    ccSigList-class                         html  
    cwReload-methods                        html  
    cytOutData-methods                      html  
    cytOutNodes-methods                     html  
    fdr                                     html  
REDIRECT:topic	 fdr<- -> fdr.html [ FAIL ]
    getGeneSymbol                           html  
    graphType-methods                       html  
REDIRECT:topic	 graphType<- -> graphType-methods.html [ FAIL ]
    hyperGTestCC                            html  
    listNames                               html  
    mergeLists-methods                      html  
    mergedData-class                        html  
    minCount                                html  
REDIRECT:topic	 minCount<- -> minCount.html [ FAIL ]
    minNodes                                html  
    pvalueType                              html  
REDIRECT:topic	 pvalueType<- -> pvalueType.html [ FAIL ]
    resetColors-methods                     html  
    show-methods                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'categoryCompare' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'categoryCompare' as categoryCompare_1.37.1.zip
* DONE (categoryCompare)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'categoryCompare' successfully unpacked and MD5 sums checked