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This page was generated on 2021-06-19 12:06:07 -0400 (Sat, 19 Jun 2021).

CHECK results for Rtreemix on riesling1

To the developers/maintainers of the Rtreemix package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rtreemix.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1610/1993HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rtreemix 1.55.0  (landing page)
Jasmina Bogojeska
Snapshot Date: 2021-06-18 14:50:08 -0400 (Fri, 18 Jun 2021)
URL: https://git.bioconductor.org/packages/Rtreemix
Branch: master
Last Commit: 3b0fa17
Last Changed Date: 2021-05-19 11:39:55 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: Rtreemix
Version: 1.55.0
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Rtreemix.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings Rtreemix_1.55.0.tar.gz
StartedAt: 2021-06-19 01:58:19 -0400 (Sat, 19 Jun 2021)
EndedAt: 2021-06-19 02:00:35 -0400 (Sat, 19 Jun 2021)
EllapsedTime: 136.1 seconds
RetCode: 0
Status:   OK  
CheckDir: Rtreemix.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Rtreemix.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings Rtreemix_1.55.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.14-bioc/meat/Rtreemix.Rcheck'
* using R version 4.1.0 (2021-05-18)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Rtreemix/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Rtreemix' version '1.55.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Rtreemix' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.plott1: no visible binding for global variable 'drawAgNode'
.plott1: no visible global function definition for 'plot.new'
.plott1: no visible global function definition for 'par'
.plott1: no visible global function definition for 'upRight'
.plott1: no visible global function definition for 'boundBox'
.plott1: no visible global function definition for 'plot.window'
.plott1: no visible global function definition for 'getX'
.plott1: no visible global function definition for 'getY'
.plott1: no visible global function definition for 'box'
.plott1: no visible global function definition for 'xy.coords'
.plott1: no visible global function definition for 'getDefaultAttrs'
.plott1: no visible global function definition for 'plot.xy'
.plott1: no visible global function definition for 'title'
.plott1: no visible global function definition for 'AgNode'
.plott1 : <anonymous>: no visible global function definition for
  'getNodeRW'
.plott1 : <anonymous>: no visible global function definition for
  'getNodeLW'
.plott1 : <anonymous>: no visible global function definition for
  'getNodeHeight'
.plott1 : <anonymous>: no visible global function definition for
  'labelText'
.plott1 : <anonymous>: no visible global function definition for
  'txtLabel'
.plott1 : <anonymous>: no visible global function definition for
  'strwidth'
.plott1 : <anonymous>: no visible global function definition for
  'strheight'
.plott1 : <anonymous>: no visible global function definition for
  'labelFontsize'
.plott1: no visible global function definition for 'AgEdge'
.plott1: no visible binding for global variable 'lines'
.plott2: no visible global function definition for 'getDefaultAttrs'
.plott2: no visible global function definition for 'removedEdges'
.plott2: no visible global function definition for 'agopen'
plot,RtreemixModel-missing: no visible global function definition for
  'par'
Undefined global functions or variables:
  AgEdge AgNode agopen boundBox box drawAgNode getDefaultAttrs
  getNodeHeight getNodeLW getNodeRW getX getY labelFontsize labelText
  lines par plot.new plot.window plot.xy removedEdges strheight
  strwidth title txtLabel upRight xy.coords
Consider adding
  importFrom("grDevices", "xy.coords")
  importFrom("graphics", "box", "lines", "par", "plot.new",
             "plot.window", "plot.xy", "strheight", "strwidth", "title")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... NOTE
   PKG_CFLAGS set in 'src/Makevars' without any corresponding files
   PKG_CFLAGS set in 'src/Makevars.win' without any corresponding files
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'D:/biocbuild/bbs-3.14-bioc/R/library/Rtreemix/libs/i386/Rtreemix.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
  Found 'rand', possibly from 'rand' (C)
  Found 'srand', possibly from 'srand' (C)
File 'D:/biocbuild/bbs-3.14-bioc/R/library/Rtreemix/libs/x64/Rtreemix.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
  Found 'rand', possibly from 'rand' (C)
  Found 'srand', possibly from 'srand' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'D:/biocbuild/bbs-3.14-bioc/meat/Rtreemix.Rcheck/00check.log'
for details.



Installation output

Rtreemix.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Rtreemix_1.55.0.tar.gz && rm -rf Rtreemix.buildbin-libdir && mkdir Rtreemix.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rtreemix.buildbin-libdir Rtreemix_1.55.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Rtreemix_1.55.0.zip && rm Rtreemix_1.55.0.tar.gz Rtreemix_1.55.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  422k  100  422k    0     0  2154k      0 --:--:-- --:--:-- --:--:-- 2154k

install for i386

* installing *source* package 'Rtreemix' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rtreemix.cc -o Rtreemix.o
In file included from include/replaceleda.hh:7,
                 from include/max_weight_branch.h:25,
                 from include/mtree.h:14,
                 from include/mtreemix.h:14,
                 from Rtreemix.cc:3:
Rtreemix.cc: In function 'SEXPREC* R_fit(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
Rtreemix.cc:596:7: note: in expansion of macro 'forall_nodes'
       forall_nodes (n, G[k]) {
       ^~~~~~~~~~~~
Rtreemix.cc: In function 'SEXPREC* R_fit1(SEXP, SEXP, SEXP, SEXP)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
Rtreemix.cc:938:7: note: in expansion of macro 'forall_nodes'
       forall_nodes (n, G[k]) {
       ^~~~~~~~~~~~
Rtreemix.cc: In function 'SEXPREC* R_fit0(SEXP, SEXP, SEXP, SEXP)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
Rtreemix.cc:1281:7: note: in expansion of macro 'forall_nodes'
       forall_nodes (n, G[k]) {
       ^~~~~~~~~~~~
Rtreemix.cc: In function 'SEXPREC* R_bootstrap(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
Rtreemix.cc:1728:7: note: in expansion of macro 'forall_nodes'
       forall_nodes (n, G[k]) {
       ^~~~~~~~~~~~
Rtreemix.cc: In function 'SEXPREC* R_random(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
Rtreemix.cc:2629:7: note: in expansion of macro 'forall_nodes'
       forall_nodes (n, G[k]) {
       ^~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rtreemix_patch.cc -o Rtreemix_patch.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c WrapGraph.cc -o WrapGraph.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cfunctions.cc -o cfunctions.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c kmeans.cc -o kmeans.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c max_weight_branch.cc -o max_weight_branch.o
In file included from include/replaceleda.hh:7,
                 from include/max_weight_branch.h:25,
                 from max_weight_branch.cc:11:
max_weight_branch.cc: In function 'void DOT(replaceleda::graph&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Node>, std::__cxx11::basic_string<char> >&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&, char*)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
max_weight_branch.cc:97:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(v, G)
   ^~~~~~~~~~~~
max_weight_branch.cc: In function 'replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> > max_weight_subgraph_indeg_le_1(replaceleda::graph&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
max_weight_branch.cc:142:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(v, G)  // choose heaviest inedge
   ^~~~~~~~~~~~
max_weight_branch.cc: In function 'void contract_all_cycles(replaceleda::graph&, int, replaceleda::array<replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> > >, replaceleda::GRAPH<replaceleda::RefCountPtr<replaceleda::Node>, replaceleda::RefCountPtr<replaceleda::Edge> >&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
max_weight_branch.cc:341:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(v, G)
   ^~~~~~~~~~~~
max_weight_branch.cc: In function 'replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> > MAX_WEIGHT_BRANCHING(replaceleda::graph&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Node>, std::__cxx11::basic_string<char> >&, replaceleda::edge_array<double>&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
max_weight_branch.cc:432:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(v, G[0])  // node labels
   ^~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mtree.cc -o mtree.o
In file included from include/replaceleda.hh:7,
                 from include/max_weight_branch.h:25,
                 from include/mtree.h:14,
                 from mtree.cc:12:
mtree.cc: In function 'void mgraph_init(replaceleda::array<std::__cxx11::basic_string<char> >&, replaceleda::graph&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Node>, std::__cxx11::basic_string<char> >&, replaceleda::edge_array<double>&, replaceleda::map<int, replaceleda::RefCountPtr<replaceleda::Node> >&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtree.cc:185:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(v, G)
   ^~~~~~~~~~~~
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtree.cc:186:5: note: in expansion of macro 'forall_nodes'
     forall_nodes(w, G)
     ^~~~~~~~~~~~
mtree.cc: In function 'replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> > mtree_bfs(replaceleda::graph&, replaceleda::node&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtree.cc:272:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(w, G)
   ^~~~~~~~~~~~
mtree.cc: In function 'double mtree_like(replaceleda::integer_vector&, replaceleda::graph&, replaceleda::map<int, replaceleda::RefCountPtr<replaceleda::Node> >&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtree.cc:321:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(w, G)
   ^~~~~~~~~~~~
mtree.cc: In function 'replaceleda::integer_vector mtree_draw(int, replaceleda::graph&, replaceleda::node&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Node>, int>&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtree.cc:444:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(w, G)
   ^~~~~~~~~~~~
mtree.cc: In function 'void mtree_directed(replaceleda::graph&, replaceleda::node&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&, double, double)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtree.cc:784:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(w, G)
   ^~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mtreemix.cc -o mtreemix.o
In file included from include/replaceleda.hh:7,
                 from include/max_weight_branch.h:25,
                 from include/mtree.h:14,
                 from mtreemix.cc:11:
mtreemix.cc: In function 'double mtree_state(replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, int>&, replaceleda::integer_vector&, replaceleda::graph&, replaceleda::map<int, replaceleda::RefCountPtr<replaceleda::Node> >&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtreemix.cc:1035:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(w, G)
   ^~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c replaceleda.cc -o replaceleda.o
In file included from include/replaceleda.hh:7,
                 from replaceleda.cc:2:
replaceleda.cc: In function 'bool replaceleda::Is_Acyclic(replaceleda::graph&, replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> >&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
replaceleda.cc:81:5: note: in expansion of macro 'forall_nodes'
     forall_nodes(v,G)
     ^~~~~~~~~~~~
replaceleda.cc: In function 'void replaceleda::CopyGraph(replaceleda::graph&, replaceleda::graph&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
replaceleda.cc:128:5: note: in expansion of macro 'forall_nodes'
     forall_nodes(v, g_source){
     ^~~~~~~~~~~~
replaceleda.cc: In function 'void replaceleda::CopyGraph(replaceleda::GRAPH<replaceleda::RefCountPtr<replaceleda::Node>, replaceleda::RefCountPtr<replaceleda::Edge> >&, replaceleda::graph&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
replaceleda.cc:149:5: note: in expansion of macro 'forall_nodes'
     forall_nodes(v, g_source){
     ^~~~~~~~~~~~
replaceleda.cc: In function 'std::ostream& replaceleda::operator<<(std::ostream&, replaceleda::graph&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
replaceleda.cc:352:5: note: in expansion of macro 'forall_nodes'
     forall_nodes(v, g){
     ^~~~~~~~~~~~
replaceleda.cc: In function 'void replaceleda::printGraph(replaceleda::graph&, replaceleda::edge_array<double>&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
replaceleda.cc:373:5: note: in expansion of macro 'forall_nodes'
     forall_nodes(v, g){
     ^~~~~~~~~~~~
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Rtreemix.dll tmp.def Rtreemix.o Rtreemix_patch.o WrapGraph.o cfunctions.o kmeans.o max_weight_branch.o mtree.o mtreemix.o replaceleda.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/Rtreemix.buildbin-libdir/00LOCK-Rtreemix/00new/Rtreemix/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Rtreemix'
    finding HTML links ... done
    L1.dist                                 html  
    L2.norm                                 html  
    Pval.dist                               html  
    RtreemixData-class                      html  
REDIRECT:topic	 Description<- -> RtreemixData-class.html [ FAIL ]
REDIRECT:topic	 Events<- -> RtreemixData-class.html [ FAIL ]
REDIRECT:topic	 Patients<- -> RtreemixData-class.html [ FAIL ]
REDIRECT:topic	 Description<-,RtreemixData-method -> RtreemixData-class.html [ FAIL ]
REDIRECT:topic	 Events<-,RtreemixData-method -> RtreemixData-class.html [ FAIL ]
REDIRECT:topic	 Patients<-,RtreemixData-method -> RtreemixData-class.html [ FAIL ]
    RtreemixGPS-class                       html  
    RtreemixModel-class                     html  
REDIRECT:topic	 Weights<- -> RtreemixModel-class.html [ FAIL ]
REDIRECT:topic	 Weights<-,RtreemixModel-method -> RtreemixModel-class.html [ FAIL ]
    RtreemixSim-class                       html  
    RtreemixStats-class                     html  
    bootstrap-methods                       html  
    comp.models                             html  
    comp.trees                              html  
    confIntGPS-methods                      html  
    distribution-methods                    html  
    fit-methods                             html  
    generate-methods                        html  
    get.tree.levels                         html  
    gps-methods                             html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.14-bioc/meat/Rtreemix.buildbin-libdir/00LOCK-Rtreemix/00new/Rtreemix/help/gps.html
    hiv.data                                html  
    kullback.leibler                        html  
    likelihoods-methods                     html  
    sim-methods                             html  
    stability.sim                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Rtreemix' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rtreemix.cc -o Rtreemix.o
In file included from include/replaceleda.hh:7,
                 from include/max_weight_branch.h:25,
                 from include/mtree.h:14,
                 from include/mtreemix.h:14,
                 from Rtreemix.cc:3:
Rtreemix.cc: In function 'SEXPREC* R_fit(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
Rtreemix.cc:596:7: note: in expansion of macro 'forall_nodes'
       forall_nodes (n, G[k]) {
       ^~~~~~~~~~~~
Rtreemix.cc: In function 'SEXPREC* R_fit1(SEXP, SEXP, SEXP, SEXP)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
Rtreemix.cc:938:7: note: in expansion of macro 'forall_nodes'
       forall_nodes (n, G[k]) {
       ^~~~~~~~~~~~
Rtreemix.cc: In function 'SEXPREC* R_fit0(SEXP, SEXP, SEXP, SEXP)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
Rtreemix.cc:1281:7: note: in expansion of macro 'forall_nodes'
       forall_nodes (n, G[k]) {
       ^~~~~~~~~~~~
Rtreemix.cc: In function 'SEXPREC* R_bootstrap(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
Rtreemix.cc:1728:7: note: in expansion of macro 'forall_nodes'
       forall_nodes (n, G[k]) {
       ^~~~~~~~~~~~
Rtreemix.cc: In function 'SEXPREC* R_random(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
Rtreemix.cc:2629:7: note: in expansion of macro 'forall_nodes'
       forall_nodes (n, G[k]) {
       ^~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rtreemix_patch.cc -o Rtreemix_patch.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c WrapGraph.cc -o WrapGraph.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cfunctions.cc -o cfunctions.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c kmeans.cc -o kmeans.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c max_weight_branch.cc -o max_weight_branch.o
In file included from include/replaceleda.hh:7,
                 from include/max_weight_branch.h:25,
                 from max_weight_branch.cc:11:
max_weight_branch.cc: In function 'void DOT(replaceleda::graph&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Node>, std::__cxx11::basic_string<char> >&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&, char*)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
max_weight_branch.cc:97:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(v, G)
   ^~~~~~~~~~~~
max_weight_branch.cc: In function 'replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> > max_weight_subgraph_indeg_le_1(replaceleda::graph&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
max_weight_branch.cc:142:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(v, G)  // choose heaviest inedge
   ^~~~~~~~~~~~
max_weight_branch.cc: In function 'void contract_all_cycles(replaceleda::graph&, int, replaceleda::array<replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> > >, replaceleda::GRAPH<replaceleda::RefCountPtr<replaceleda::Node>, replaceleda::RefCountPtr<replaceleda::Edge> >&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
max_weight_branch.cc:341:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(v, G)
   ^~~~~~~~~~~~
max_weight_branch.cc: In function 'replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> > MAX_WEIGHT_BRANCHING(replaceleda::graph&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Node>, std::__cxx11::basic_string<char> >&, replaceleda::edge_array<double>&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
max_weight_branch.cc:432:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(v, G[0])  // node labels
   ^~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mtree.cc -o mtree.o
In file included from include/replaceleda.hh:7,
                 from include/max_weight_branch.h:25,
                 from include/mtree.h:14,
                 from mtree.cc:12:
mtree.cc: In function 'void mgraph_init(replaceleda::array<std::__cxx11::basic_string<char> >&, replaceleda::graph&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Node>, std::__cxx11::basic_string<char> >&, replaceleda::edge_array<double>&, replaceleda::map<int, replaceleda::RefCountPtr<replaceleda::Node> >&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtree.cc:185:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(v, G)
   ^~~~~~~~~~~~
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtree.cc:186:5: note: in expansion of macro 'forall_nodes'
     forall_nodes(w, G)
     ^~~~~~~~~~~~
mtree.cc: In function 'replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> > mtree_bfs(replaceleda::graph&, replaceleda::node&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtree.cc:272:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(w, G)
   ^~~~~~~~~~~~
mtree.cc: In function 'double mtree_like(replaceleda::integer_vector&, replaceleda::graph&, replaceleda::map<int, replaceleda::RefCountPtr<replaceleda::Node> >&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtree.cc:321:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(w, G)
   ^~~~~~~~~~~~
mtree.cc: In function 'replaceleda::integer_vector mtree_draw(int, replaceleda::graph&, replaceleda::node&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Node>, int>&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtree.cc:444:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(w, G)
   ^~~~~~~~~~~~
mtree.cc: In function 'void mtree_directed(replaceleda::graph&, replaceleda::node&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&, double, double)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtree.cc:784:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(w, G)
   ^~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mtreemix.cc -o mtreemix.o
In file included from include/replaceleda.hh:7,
                 from include/max_weight_branch.h:25,
                 from include/mtree.h:14,
                 from mtreemix.cc:11:
mtreemix.cc: In function 'double mtree_state(replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, int>&, replaceleda::integer_vector&, replaceleda::graph&, replaceleda::map<int, replaceleda::RefCountPtr<replaceleda::Node> >&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
mtreemix.cc:1035:3: note: in expansion of macro 'forall_nodes'
   forall_nodes(w, G)
   ^~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c replaceleda.cc -o replaceleda.o
In file included from include/replaceleda.hh:7,
                 from replaceleda.cc:2:
replaceleda.cc: In function 'bool replaceleda::Is_Acyclic(replaceleda::graph&, replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> >&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
replaceleda.cc:81:5: note: in expansion of macro 'forall_nodes'
     forall_nodes(v,G)
     ^~~~~~~~~~~~
replaceleda.cc: In function 'void replaceleda::CopyGraph(replaceleda::graph&, replaceleda::graph&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
replaceleda.cc:128:5: note: in expansion of macro 'forall_nodes'
     forall_nodes(v, g_source){
     ^~~~~~~~~~~~
replaceleda.cc: In function 'void replaceleda::CopyGraph(replaceleda::GRAPH<replaceleda::RefCountPtr<replaceleda::Node>, replaceleda::RefCountPtr<replaceleda::Edge> >&, replaceleda::graph&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
replaceleda.cc:149:5: note: in expansion of macro 'forall_nodes'
     forall_nodes(v, g_source){
     ^~~~~~~~~~~~
replaceleda.cc: In function 'std::ostream& replaceleda::operator<<(std::ostream&, replaceleda::graph&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
replaceleda.cc:352:5: note: in expansion of macro 'forall_nodes'
     forall_nodes(v, g){
     ^~~~~~~~~~~~
replaceleda.cc: In function 'void replaceleda::printGraph(replaceleda::graph&, replaceleda::edge_array<double>&)':
include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value]
 #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() ,  n = G.getNode(icount);++icount)
                                                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
replaceleda.cc:373:5: note: in expansion of macro 'forall_nodes'
     forall_nodes(v, g){
     ^~~~~~~~~~~~
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Rtreemix.dll tmp.def Rtreemix.o Rtreemix_patch.o WrapGraph.o cfunctions.o kmeans.o max_weight_branch.o mtree.o mtreemix.o replaceleda.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/Rtreemix.buildbin-libdir/Rtreemix/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rtreemix' as Rtreemix_1.55.0.zip
* DONE (Rtreemix)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'Rtreemix' successfully unpacked and MD5 sums checked

Tests output


Example timings

Rtreemix.Rcheck/examples_i386/Rtreemix-Ex.timings

nameusersystemelapsed
L1.dist000
L2.norm000
Pval.dist000
RtreemixData-class0.060.000.07
RtreemixGPS-class000
RtreemixModel-class0.550.080.62
RtreemixSim-class0.000.020.02
RtreemixStats-class0.030.000.03
bootstrap-methods000
comp.models0.020.000.01
comp.trees000
confIntGPS-methods000
distribution-methods0.030.000.04
fit-methods0.330.000.32
generate-methods0.010.000.02
get.tree.levels000
gps-methods000
hiv.data000
kullback.leibler000
likelihoods-methods0.000.010.02
sim-methods0.030.000.03
stability.sim000

Rtreemix.Rcheck/examples_x64/Rtreemix-Ex.timings

nameusersystemelapsed
L1.dist000
L2.norm000
Pval.dist0.000.020.02
RtreemixData-class0.050.000.06
RtreemixGPS-class000
RtreemixModel-class0.510.070.59
RtreemixSim-class000
RtreemixStats-class0.010.020.03
bootstrap-methods000
comp.models000
comp.trees0.020.000.01
confIntGPS-methods000
distribution-methods0.030.000.03
fit-methods0.160.000.16
generate-methods000
get.tree.levels000
gps-methods000
hiv.data000
kullback.leibler000
likelihoods-methods0.020.000.01
sim-methods0.030.000.03
stability.sim000