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This page was generated on 2021-09-18 12:05:52 -0400 (Sat, 18 Sep 2021).

BUILD results for Rsubread on nebbiolo2

To the developers/maintainers of the Rsubread package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rsubread.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1623/2029HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rsubread 2.7.3  (landing page)
Wei Shi , Yang Liao and Gordon K Smyth
Snapshot Date: 2021-09-17 14:50:09 -0400 (Fri, 17 Sep 2021)
git_url: https://git.bioconductor.org/packages/Rsubread
git_branch: master
git_last_commit: d345cca
git_last_commit_date: 2021-09-10 01:05:57 -0400 (Fri, 10 Sep 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: Rsubread
Version: 2.7.3
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsubread
StartedAt: 2021-09-17 18:16:18 -0400 (Fri, 17 Sep 2021)
EndedAt: 2021-09-17 18:18:01 -0400 (Fri, 17 Sep 2021)
EllapsedTime: 103.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsubread
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* checking for file ‘Rsubread/DESCRIPTION’ ... OK
* preparing ‘Rsubread’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Rsubread.Rnw’ using Sweave

Error: processing vignette 'Rsubread.Rnw' failed with diagnostics:
 chunk 4 
Error in file.remove(fout_annot) : object 'fout_annot' not found

--- failed re-building ‘Rsubread.Rnw’

SUMMARY: processing the following file failed:
  ‘Rsubread.Rnw’

Error: Vignette re-building failed.
Execution halted