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This page was generated on 2021-06-21 12:05:48 -0400 (Mon, 21 Jun 2021).

INSTALL results for RpsiXML on riesling1

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raw results

Package 1585/1993HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RpsiXML 2.35.0  (landing page)
Jitao David Zhang
Snapshot Date: 2021-06-20 14:50:05 -0400 (Sun, 20 Jun 2021)
URL: https://git.bioconductor.org/packages/RpsiXML
Branch: master
Last Commit: 922358c
Last Changed Date: 2021-05-19 11:41:31 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: RpsiXML
Version: 2.35.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RpsiXML_2.35.0.tar.gz && rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RpsiXML.buildbin-libdir RpsiXML_2.35.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.35.0.zip && rm RpsiXML_2.35.0.tar.gz RpsiXML_2.35.0.zip
StartedAt: 2021-06-20 17:18:18 -0400 (Sun, 20 Jun 2021)
EndedAt: 2021-06-20 17:20:45 -0400 (Sun, 20 Jun 2021)
EllapsedTime: 146.7 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RpsiXML_2.35.0.tar.gz && rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RpsiXML.buildbin-libdir RpsiXML_2.35.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.35.0.zip && rm RpsiXML_2.35.0.tar.gz RpsiXML_2.35.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  1 1990k    1 40435    0     0   248k      0  0:00:08 --:--:--  0:00:08  246k
100 1990k  100 1990k    0     0  6440k      0 --:--:-- --:--:-- --:--:-- 6419k

install for i386

* installing *source* package 'RpsiXML' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RpsiXML'
    finding HTML links ... done
    BIOGRID.PSIMI25                         html  
    availableXrefs-methods                  html  
    availableXrefs                          html  
    bait                                    html  
    buildPCHypergraph                       html  
    complexName                             html  
    complexes                               html  
    eListHandler                            html  
    getAbstractByPMID                       html  
    graphSpeciesConverter                   html  
    interactionType                         html  
    interactions                            html  
    interactorInfo-methods                  html  
    interactorInfo                          html  
    interactors                             html  
REDIRECT:topic	 interactors<- -> interactors.html [ FAIL ]
REDIRECT:topic	 interactors<--methods -> interactors.html [ FAIL ]
REDIRECT:topic	 interactors<-,interactorListBase,list-method -> interactors.html [ FAIL ]
REDIRECT:topic	 interactors<-,interactorListBase,NULL-method -> interactors.html [ FAIL ]
    list2Matrix                             html  
    null2na                                 html  
    numInteractions-methods                 html  
    parsePsimi25Interaction                 html  
    psimi25Attribute-class                  html  
REDIRECT:topic	 iValue<-,psimi25Attribute-method -> psimi25Attribute-class.html [ FAIL ]
REDIRECT:topic	 name<-,psimi25Attribute,ANY-method -> psimi25Attribute-class.html [ FAIL ]
REDIRECT:topic	 name<-,psimi25Attribute,character-method -> psimi25Attribute-class.html [ FAIL ]
REDIRECT:topic	 nameAc<-,psimi25Attribute-method -> psimi25Attribute-class.html [ FAIL ]
REDIRECT:topic	 value<-,psimi25Attribute-method -> psimi25Attribute-class.html [ FAIL ]
    psimi25Complex-class                    html  
    psimi25ComplexEntry-class               html  
    psimi25Experiment-class                 html  
    psimi25Graph-class                      html  
    psimi25Hypergraph-class                 html  
    psimi25Hypergraph2GraphNEL              html  
    psimi25Interaction-class                html  
    psimi25InteractionEntry-class           html  
    psimi25Interactor-class                 html  
    psimi25Source-class                     html  
    psimi25XML2Graph                        html  
    separateXMLDataByExpt                   html  
    sourceId-methods                        html  
REDIRECT:topic	 sourceDb<- -> sourceId-methods.html [ FAIL ]
REDIRECT:topic	 sourceId<- -> sourceId-methods.html [ FAIL ]
REDIRECT:topic	 "sourceId<-"-methods -> sourceId-methods.html [ FAIL ]
REDIRECT:topic	 "sourceDb<-"-methods -> sourceId-methods.html [ FAIL ]
REDIRECT:topic	 sourceId<-,sourceDbAndId,character-method -> sourceId-methods.html [ FAIL ]
REDIRECT:topic	 sourceDb<-,sourceDbAndId,character-method -> sourceId-methods.html [ FAIL ]
    taxId-methods                           html  
REDIRECT:topic	 taxId<- -> taxId-methods.html [ FAIL ]
REDIRECT:topic	 taxId<-,organismTaxIdAndName,character-method -> taxId-methods.html [ FAIL ]
REDIRECT:topic	 organismName<- -> taxId-methods.html [ FAIL ]
REDIRECT:topic	 organismName<-,organismTaxIdAndName,character-method -> taxId-methods.html [ FAIL ]
    translateID-methods                     html  
    translateID                             html  
    uniprot-methods                         html  
    uniprot                                 html  
    validatePSIMI25                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RpsiXML' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RpsiXML' as RpsiXML_2.35.0.zip
* DONE (RpsiXML)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'RpsiXML' successfully unpacked and MD5 sums checked