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This page was generated on 2021-09-18 12:05:52 -0400 (Sat, 18 Sep 2021).

BUILD results for RNASeqR on nebbiolo2

To the developers/maintainers of the RNASeqR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNASeqR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1596/2029HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RNASeqR 1.11.0  (landing page)
Kuan-Hao Chao
Snapshot Date: 2021-09-17 14:50:09 -0400 (Fri, 17 Sep 2021)
git_url: https://git.bioconductor.org/packages/RNASeqR
git_branch: master
git_last_commit: 39b3e08
git_last_commit_date: 2021-07-29 15:33:22 -0400 (Thu, 29 Jul 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64... NOT SUPPORTED ...
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: RNASeqR
Version: 1.11.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RNASeqR
StartedAt: 2021-09-17 18:14:29 -0400 (Fri, 17 Sep 2021)
EndedAt: 2021-09-17 18:15:29 -0400 (Fri, 17 Sep 2021)
EllapsedTime: 59.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RNASeqR
###
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* checking for file ‘RNASeqR/DESCRIPTION’ ... OK
* preparing ‘RNASeqR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RNASeqR.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: pathview

##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
Loading required package: edgeR
Loading required package: limma


Welcome to RNASeqR
Warning in dir.create(rnaseq_result.path, recursive = TRUE) :
  '/tmp/RNASeqR' already exists
************** Checking input parameters ************

(✔) : Input parameters are all not NA !! 


************** Checking operating system type ************

(✔) : Your system operating system is 'linux'


************** Checking python version ************

Quitting from lines 244-252 (RNASeqR.Rmd) 
Error: processing vignette 'RNASeqR.Rmd' failed with diagnostics:
invalid argument type
--- failed re-building ‘RNASeqR.Rmd’

SUMMARY: processing the following file failed:
  ‘RNASeqR.Rmd’

Error: Vignette re-building failed.
Execution halted