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INSTALL results for OrganismDbi on riesling1

This page was generated on 2021-06-12 12:05:12 -0400 (Sat, 12 Jun 2021).

Package 1294/1993HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OrganismDbi 1.35.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-06-11 14:50:09 -0400 (Fri, 11 Jun 2021)
URL: https://git.bioconductor.org/packages/OrganismDbi
Branch: master
Last Commit: 22bca21
Last Changed Date: 2021-05-19 11:53:46 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
To the developers/maintainers of the OrganismDbi package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OrganismDbi.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

Summary

Package: OrganismDbi
Version: 1.35.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/OrganismDbi_1.35.0.tar.gz && rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OrganismDbi.buildbin-libdir OrganismDbi_1.35.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL OrganismDbi_1.35.0.zip && rm OrganismDbi_1.35.0.tar.gz OrganismDbi_1.35.0.zip
StartedAt: 2021-06-11 18:10:32 -0400 (Fri, 11 Jun 2021)
EndedAt: 2021-06-11 18:13:11 -0400 (Fri, 11 Jun 2021)
EllapsedTime: 159.0 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/OrganismDbi_1.35.0.tar.gz && rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OrganismDbi.buildbin-libdir OrganismDbi_1.35.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL OrganismDbi_1.35.0.zip && rm OrganismDbi_1.35.0.tar.gz OrganismDbi_1.35.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 58640  100 58640    0     0   590k      0 --:--:-- --:--:-- --:--:--  590k

install for i386

* installing *source* package 'OrganismDbi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'OrganismDbi'
    finding HTML links ... done
    OrganismDb                              html  
REDIRECT:topic	 class:MultiDb -> OrganismDb.html [ FAIL ]
REDIRECT:topic	 class:OrganismDb -> OrganismDb.html [ FAIL ]
REDIRECT:topic	 TxDb<- -> OrganismDb.html [ FAIL ]
REDIRECT:topic	 TxDb<-,OrganismDb-method -> OrganismDb.html [ FAIL ]
    finding level-2 HTML links ... done

Rd warning: D:/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp0w8mex/R.INSTALL40785b60f6/OrganismDbi/man/OrganismDb.Rd:191: missing link 'GenomeInfoDb'
    coordinate-mapping-method               html  
    makeOrganismDbFromBiomart               html  
    makeOrganismDbFromTxDb                  html  
    makeOrganismDbFromUCSC                  html  
    makeOrganismPackage                     html  
    rangeBasedAccessors                     html  
REDIRECT:topic	 isActiveSeq<-,MultiDb-method -> rangeBasedAccessors.html [ FAIL ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'OrganismDbi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OrganismDbi' as OrganismDbi_1.35.0.zip
* DONE (OrganismDbi)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'OrganismDbi' successfully unpacked and MD5 sums checked