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This page was generated on 2021-06-22 12:06:05 -0400 (Tue, 22 Jun 2021).

CHECK results for NetSAM on riesling1

To the developers/maintainers of the NetSAM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NetSAM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1237/1993HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NetSAM 1.33.0  (landing page)
Zhiao Shi
Snapshot Date: 2021-06-21 14:50:06 -0400 (Mon, 21 Jun 2021)
URL: https://git.bioconductor.org/packages/NetSAM
Branch: master
Last Commit: e8d05cd
Last Changed Date: 2021-05-19 11:59:14 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: NetSAM
Version: 1.33.0
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:NetSAM.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings NetSAM_1.33.0.tar.gz
StartedAt: 2021-06-22 01:14:41 -0400 (Tue, 22 Jun 2021)
EndedAt: 2021-06-22 01:20:34 -0400 (Tue, 22 Jun 2021)
EllapsedTime: 352.5 seconds
RetCode: 1
Status:   ERROR  
CheckDir: NetSAM.Rcheck
Warnings: NA

Command output

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### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:NetSAM.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings NetSAM_1.33.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.14-bioc/meat/NetSAM.Rcheck'
* using R version 4.1.0 (2021-05-18)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'NetSAM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'NetSAM' version '1.33.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'NetSAM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'NetSAM-Ex.R' failed
Warning in file(con, "r") :
  cannot open file '../NetSAM-Ex_i386.Rout': Permission denied
Error in file(con, "r") : cannot open the connection
Execution halted

Installation output

NetSAM.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/NetSAM_1.33.0.tar.gz && rm -rf NetSAM.buildbin-libdir && mkdir NetSAM.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NetSAM.buildbin-libdir NetSAM_1.33.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL NetSAM_1.33.0.zip && rm NetSAM_1.33.0.tar.gz NetSAM_1.33.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  1  837k    1 11997    0     0   156k      0  0:00:05 --:--:--  0:00:05  154k
100  837k  100  837k    0     0  3857k      0 --:--:-- --:--:-- --:--:-- 3839k

install for i386

* installing *source* package 'NetSAM' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'NetSAM'
    finding HTML links ... done
    GOAssociation                           html  
    MatNet                                  html  
    MatSAM                                  html  
    NetAnalyzer                             html  
    NetSAM-package                          html  
    NetSAM                                  html  
    consensusNet                            html  
    featureAssociation                      html  
    mapToSymbol                             html  
    mergeDuplicate                          html  
    netsam_output                           html  
    testFileFormat                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'NetSAM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NetSAM' as NetSAM_1.33.0.zip
* DONE (NetSAM)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'NetSAM' successfully unpacked and MD5 sums checked

Tests output


Example timings