Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJK[L]MNOPQRSTUVWXYZ

This page was generated on 2021-08-03 12:06:16 -0400 (Tue, 03 Aug 2021).

INSTALL results for LOBSTAHS on riesling1

To the developers/maintainers of the LOBSTAHS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LOBSTAHS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 979/2015HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LOBSTAHS 1.19.0  (landing page)
James Collins
Snapshot Date: 2021-08-02 14:50:09 -0400 (Mon, 02 Aug 2021)
URL: https://git.bioconductor.org/packages/LOBSTAHS
Branch: master
Last Commit: 3deb41f
Last Changed Date: 2021-05-19 12:21:39 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  NO, package depends on 'xcms' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: LOBSTAHS
Version: 1.19.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/LOBSTAHS_1.19.0.tar.gz && rm -rf LOBSTAHS.buildbin-libdir && mkdir LOBSTAHS.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LOBSTAHS.buildbin-libdir LOBSTAHS_1.19.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL LOBSTAHS_1.19.0.zip && rm LOBSTAHS_1.19.0.tar.gz LOBSTAHS_1.19.0.zip
StartedAt: 2021-08-02 18:09:05 -0400 (Mon, 02 Aug 2021)
EndedAt: 2021-08-02 18:11:34 -0400 (Mon, 02 Aug 2021)
EllapsedTime: 148.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/LOBSTAHS_1.19.0.tar.gz && rm -rf LOBSTAHS.buildbin-libdir && mkdir LOBSTAHS.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LOBSTAHS.buildbin-libdir LOBSTAHS_1.19.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL LOBSTAHS_1.19.0.zip && rm LOBSTAHS_1.19.0.tar.gz LOBSTAHS_1.19.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2701k  100 2701k    0     0  5195k      0 --:--:-- --:--:-- --:--:-- 5195k

install for i386

* installing *source* package 'LOBSTAHS' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
multiple methods tables found for 'bin' 
Creating a new generic function for 'polarity<-' in package 'LOBSTAHS'
** help
*** installing help indices
  converting help for package 'LOBSTAHS'
    finding HTML links ... done
    LOBSet-class                            html  
REDIRECT:topic	 LOBisoID_diagnostics<-,LOBSet-method -> LOBSet-class.html [ FAIL ]
REDIRECT:topic	 LOBisoID_diagnostics<- -> LOBSet-class.html [ FAIL ]
REDIRECT:topic	 peakdata<-,LOBSet-method -> LOBSet-class.html [ FAIL ]
REDIRECT:topic	 peakdata<- -> LOBSet-class.html [ FAIL ]
REDIRECT:topic	 polarity<-,LOBSet-method -> LOBSet-class.html [ FAIL ]
REDIRECT:topic	 polarity<- -> LOBSet-class.html [ FAIL ]
REDIRECT:topic	 sampnames<-,LOBSet-method -> LOBSet-class.html [ FAIL ]
REDIRECT:topic	 sampnames<- -> LOBSet-class.html [ FAIL ]
REDIRECT:topic	 LOBscreen_settings<-,LOBSet-method -> LOBSet-class.html [ FAIL ]
REDIRECT:topic	 LOBscreen_settings<- -> LOBSet-class.html [ FAIL ]
REDIRECT:topic	 LOBscreen_diagnostics<-,LOBSet-method -> LOBSet-class.html [ FAIL ]
REDIRECT:topic	 LOBscreen_diagnostics<- -> LOBSet-class.html [ FAIL ]
    finding level-2 HTML links ... done

    LOBSet                                  html  
    LOBdbase-class                          html  
REDIRECT:topic	 frag_ID<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 frag_ID<- -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 mz<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 mz<- -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 exact_parent_neutral_mass<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 exact_parent_neutral_mass<- -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 lipid_class<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 lipid_class<- -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 species<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 species<- -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 adduct<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 adduct<- -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 adduct_rank<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 adduct_rank<- -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 FA_total_no_C<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 FA_total_no_C<- -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 FA_total_no_DB<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 FA_total_no_DB<- -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 degree_oxidation<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 degree_oxidation<- -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 parent_elem_formula<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 parent_elem_formula<- -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 parent_compound_name<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 parent_compound_name<- -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 polarity<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 num_entries<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 num_entries<- -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 num_compounds<-,LOBdbase-method -> LOBdbase-class.html [ FAIL ]
REDIRECT:topic	 num_compounds<- -> LOBdbase-class.html [ FAIL ]
    LOBdbase                                html  
    LOBdefaults                             html  
    doLOBscreen                             html  
    exportDBtoCSV                           html  
    extractLOBdbasedata                     html  
    generateLOBdbase                        html  
    getLOBpeaklist                          html  
    loadLOBdbase                            html  
** building package indices
** installing vignettes
   'LOBSTAHS.Rmd' using 'UTF-8' 
** testing if installed package can be loaded from temporary location
Warning: multiple methods tables found for 'bin'
Warning: multiple methods tables found for 'polarity<-'
** testing if installed package can be loaded from final location
Warning: multiple methods tables found for 'bin'
Warning: multiple methods tables found for 'polarity<-'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'LOBSTAHS' ...
** testing if installed package can be loaded
Warning: multiple methods tables found for 'bin'
Warning: multiple methods tables found for 'polarity<-'
* MD5 sums
packaged installation of 'LOBSTAHS' as LOBSTAHS_1.19.0.zip
* DONE (LOBSTAHS)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'LOBSTAHS' successfully unpacked and MD5 sums checked