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This page was generated on 2021-07-24 12:06:30 -0400 (Sat, 24 Jul 2021).

BUILD BIN results for GeneNetworkBuilder on merida1

To the developers/maintainers of the GeneNetworkBuilder package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneNetworkBuilder.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 704/2008HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneNetworkBuilder 1.35.0  (landing page)
Jianhong Ou
Snapshot Date: 2021-07-23 14:50:08 -0400 (Fri, 23 Jul 2021)
URL: https://git.bioconductor.org/packages/GeneNetworkBuilder
Branch: master
Last Commit: 1bb180e
Last Changed Date: 2021-05-19 11:53:28 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  NO, package depends on 'Rgraphviz' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GeneNetworkBuilder
Version: 1.35.0
Command: rm -rf GeneNetworkBuilder.buildbin-libdir && mkdir GeneNetworkBuilder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneNetworkBuilder_1.35.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R GeneNetworkBuilder.buildbin-libdir
StartedAt: 2021-07-24 08:51:49 -0400 (Sat, 24 Jul 2021)
EndedAt: 2021-07-24 08:52:42 -0400 (Sat, 24 Jul 2021)
EllapsedTime: 52.9 seconds
RetCode: 0
Status:   OK  
PackageFile: GeneNetworkBuilder_1.35.0.tgz
PackageFileSize: 7.26 MiB

Command output

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### Running command:
###
###   rm -rf GeneNetworkBuilder.buildbin-libdir && mkdir GeneNetworkBuilder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneNetworkBuilder_1.35.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R GeneNetworkBuilder.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneNetworkBuilder.buildbin-libdir GeneNetworkBuilder_1.35.0.tar.gz'
>>>>>>> 

* installing *source* package ‘GeneNetworkBuilder’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c geneTree.cpp -o geneTree.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c nodefilter.cpp -o nodefilter.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GeneNetworkBuilder.so geneTree.o nodefilter.o registerDynamicSymbol.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/GeneNetworkBuilder.buildbin-libdir/00LOCK-GeneNetworkBuilder/00new/GeneNetworkBuilder/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GeneNetworkBuilder)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs/GeneNetworkBuilder.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs/GeneNetworkBuilder.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs/GeneNetworkBuilder.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs/GeneNetworkBuilder.so"