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This page was generated on 2021-08-02 12:05:11 -0400 (Mon, 02 Aug 2021).

BUILD BIN results for EventPointer on merida1

To the developers/maintainers of the EventPointer package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EventPointer.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 589/2015HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EventPointer 3.1.0  (landing page)
Juan A. Ferrer-Bonsoms
Snapshot Date: 2021-08-01 14:50:04 -0400 (Sun, 01 Aug 2021)
URL: https://git.bioconductor.org/packages/EventPointer
Branch: master
Last Commit: ed9dd41
Last Changed Date: 2021-05-19 12:26:09 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: EventPointer
Version: 3.1.0
Command: rm -rf EventPointer.buildbin-libdir && mkdir EventPointer.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh EventPointer_3.1.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R EventPointer.buildbin-libdir
StartedAt: 2021-08-02 09:02:46 -0400 (Mon, 02 Aug 2021)
EndedAt: 2021-08-02 09:04:18 -0400 (Mon, 02 Aug 2021)
EllapsedTime: 92.4 seconds
RetCode: 0
Status:   OK  
PackageFile: EventPointer_3.1.0.tgz
PackageFileSize: 1.274 MiB

Command output

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### Running command:
###
###   rm -rf EventPointer.buildbin-libdir && mkdir EventPointer.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh EventPointer_3.1.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R EventPointer.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=EventPointer.buildbin-libdir EventPointer_3.1.0.tar.gz'
>>>>>>> 

* installing *source* package ‘EventPointer’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c dgl.c -o dgl.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c params.c -o params.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pgl.c -o pgl.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c qdgl.c -o qdgl.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c qgl.c -o qgl.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rgl.c -o rgl.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o EventPointer.so dgl.o params.o pgl.o qdgl.o qgl.o rgl.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/EventPointer.buildbin-libdir/00LOCK-EventPointer/00new/EventPointer/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** testing if installed package keeps a record of temporary installation path
* DONE (EventPointer)


>>>>>>> 
>>>>>>> FIXING LINKS FOR EventPointer.buildbin-libdir/EventPointer/libs/EventPointer.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "EventPointer.buildbin-libdir/EventPointer/libs/EventPointer.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "EventPointer.buildbin-libdir/EventPointer/libs/EventPointer.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "EventPointer.buildbin-libdir/EventPointer/libs/EventPointer.so"