Back to Multiple platform build/check report for BioC 3.14
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-10-25 14:06:12 -0400 (Mon, 25 Oct 2021).

INSTALL results for DEScan2 on riesling1

To the developers/maintainers of the DEScan2 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DEScan2.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 493/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEScan2 1.13.0  (landing page)
Dario Righelli
Snapshot Date: 2021-10-24 14:50:04 -0400 (Sun, 24 Oct 2021)
git_url: https://git.bioconductor.org/packages/DEScan2
git_branch: master
git_last_commit: 6225802
git_last_commit_date: 2021-05-19 12:33:58 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  

Summary

Package: DEScan2
Version: 1.13.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DEScan2_1.13.0.tar.gz && rm -rf DEScan2.buildbin-libdir && mkdir DEScan2.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEScan2.buildbin-libdir DEScan2_1.13.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DEScan2_1.13.0.zip && rm DEScan2_1.13.0.tar.gz DEScan2_1.13.0.zip
StartedAt: 2021-10-24 19:00:59 -0400 (Sun, 24 Oct 2021)
EndedAt: 2021-10-24 19:03:43 -0400 (Sun, 24 Oct 2021)
EllapsedTime: 164.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DEScan2_1.13.0.tar.gz && rm -rf DEScan2.buildbin-libdir && mkdir DEScan2.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEScan2.buildbin-libdir DEScan2_1.13.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DEScan2_1.13.0.zip && rm DEScan2_1.13.0.tar.gz DEScan2_1.13.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 58 2470k   58 1439k    0     0  2731k      0 --:--:-- --:--:-- --:--:-- 2731k
100 2470k  100 2470k    0     0  3450k      0 --:--:-- --:--:-- --:--:-- 3445k

install for i386

* installing *source* package 'DEScan2' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c rcpparma_max_win.cpp -o rcpparma_max_win.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o DEScan2.dll tmp.def RcppExports.o rcpparma_max_win.o -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lRlapack -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/DEScan2.buildbin-libdir/00LOCK-DEScan2/00new/DEScan2/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DEScan2'
    finding HTML links ... done
    DEScan2                                 html  
    RleListToRleMatrix                      html  
    binToChrCoordMatRowNames                html  
    binnedCovOnly                           html  
    binnedCoverage                          html  
    c_get_disjoint_max_win                  html  
    computeCoverageMovingWindowOnChr        html  
    computeLambdaOnChr                      html  
    computeZ                                html  
    constructBedRanges                      html  
    countFinalRegions                       html  
    createGranges                           html  
    cutGRangesPerChromosome                 html  
    divideEachSampleByChromosomes           html  
    evenRunMean                             html  
    evenRunSum                              html  
    finalRegions                            html  
    findOverlapsOverSamples                 html  
    findPeaks                               html  
    fromSamplesToChrsGRangesList            html  
    generateDFofSamplesPerChromosomes       html  
    get_disjoint_max_win                    html  
    giveUniqueNamesToPeaksOverSamples       html  
    initMergedPeaksNames                    html  
    keepRelevantChrs                        html  
    rcpparma_get_disjoint_max_win           html  
    readBamAsBed                            html  
    readBedFile                             html  
    readFilesAsGRangesList                  html  
    saveGRangesAsBed                        html  
    saveGRangesAsTsv                        html  
    setGRGenomeInfo                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DEScan2' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c rcpparma_max_win.cpp -o rcpparma_max_win.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o DEScan2.dll tmp.def RcppExports.o rcpparma_max_win.o -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lRlapack -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/DEScan2.buildbin-libdir/DEScan2/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEScan2' as DEScan2_1.13.0.zip
* DONE (DEScan2)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'DEScan2' successfully unpacked and MD5 sums checked