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This page was generated on 2021-09-20 12:05:04 -0400 (Mon, 20 Sep 2021).

INSTALL results for DAPAR on riesling1

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raw results

Package 436/2029HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DAPAR 1.25.0  (landing page)
Samuel Wieczorek
Snapshot Date: 2021-09-19 14:50:04 -0400 (Sun, 19 Sep 2021)
git_url: https://git.bioconductor.org/packages/DAPAR
git_branch: master
git_last_commit: 029dc71
git_last_commit_date: 2021-09-17 06:39:26 -0400 (Fri, 17 Sep 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    ERROR  
riesling1Windows Server 2019 Standard / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    ERROR    OK  

Summary

Package: DAPAR
Version: 1.25.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DAPAR_1.25.0.tar.gz && rm -rf DAPAR.buildbin-libdir && mkdir DAPAR.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DAPAR.buildbin-libdir DAPAR_1.25.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DAPAR_1.25.0.zip && rm DAPAR_1.25.0.tar.gz DAPAR_1.25.0.zip
StartedAt: 2021-09-19 19:04:38 -0400 (Sun, 19 Sep 2021)
EndedAt: 2021-09-19 19:07:28 -0400 (Sun, 19 Sep 2021)
EllapsedTime: 170.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DAPAR_1.25.0.tar.gz && rm -rf DAPAR.buildbin-libdir && mkdir DAPAR.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DAPAR.buildbin-libdir DAPAR_1.25.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DAPAR_1.25.0.zip && rm DAPAR_1.25.0.tar.gz DAPAR_1.25.0.zip
###
##############################################################################
##############################################################################


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install for i386

* installing *source* package 'DAPAR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DAPAR'
    finding HTML links ... done
    AggregateMetacell                       html  
    BuildAdjacencyMatrix                    html  
    BuildColumnToProteinDataset             html  
    BuildColumnToProteinDataset_par         html  
    BuildMetaCell                           html  
    CVDistD_HC                              html  
    CountPep                                html  
    ExtendPalette                           html  
    GOAnalysisSave                          html  
    finding level-2 HTML links ... done

    GetColorsForConditions                  html  
    GetDetailedNbPeptides                   html  
    GetDetailedNbPeptidesUsed               html  
    GetIndices_BasedOnConditions            html  
    GetIndices_MetacellFiltering            html  
    GetIndices_WholeLine                    html  
    GetIndices_WholeMatrix                  html  
    GetMetacell                             html  
    GetNbPeptidesUsed                       html  
    GetTypeofData                           html  
    Get_AllComparisons                      html  
    GlobalQuantileAlignment                 html  
    GraphPepProt                            html  
    LH0                                     html  
    LH0.lm                                  html  
    LH1                                     html  
    LH1.lm                                  html  
    LOESS                                   html  
    MeanCentering                           html  
    MetaCellFiltering                       html  
    MetacellFilteringScope                  html  
    Metacell_generic                        html  
    Metacell_maxquant                       html  
    Metacell_proline                        html  
    NumericalFiltering                      html  
    NumericalgetIndicesOfLinesToRemove      html  
    QuantileCentering                       html  
    Set_POV_MEC_tags                        html  
    StringBasedFiltering                    html  
    StringBasedFiltering2                   html  
    SumByColumns                            html  
    SymFilteringOperators                   html  
    UpdateMetacell                          html  
    aggregateIter                           html  
    aggregateIterParallel                   html  
    aggregateMean                           html  
    aggregateSum                            html  
    aggregateTopn                           html  
    averageIntensities                      html  
    barplotEnrichGO_HC                      html  
    barplotGroupGO_HC                       html  
    boxPlotD_HC                             html  
    buildGraph                              html  
    check.conditions                        html  
    check.design                            html  
    checkClusterability                     html  
    classic1wayAnova                        html  
    compareNormalizationD_HC                html  
    compute_t_tests                         html  
    corrMatrixD_HC                          html  
    createMSnset                            html  
    dapar_hc_ExportMenu                     html  
    dapar_hc_chart                          html  
    deleteLinesFromIndices                  html  
    densityPlotD_HC                         html  
    diffAnaComputeFDR                       html  
    diffAnaGetSignificant                   html  
    diffAnaSave                             html  
    diffAnaVolcanoplot                      html  
    diffAnaVolcanoplot_rCharts              html  
    display.CC.visNet                       html  
    enrich_GO                               html  
    finalizeAggregation                     html  
    findMECBlock                            html  
    formatLimmaResult                       html  
    formatPHResults                         html  
    fudge2LRT                               html  
    get.pep.prot.cc                         html  
    getIndicesConditions                    html  
    getIndicesOfLinesToRemove               html  
    getListNbValuesInLines                  html  
    getNumberOf                             html  
    getNumberOfEmptyLines                   html  
    getPourcentageOfMV                      html  
    getProcessingInfo                       html  
    getProteinsStats                        html  
    getQuantile4Imp                         html  
    getTextForAggregation                   html  
    getTextForAnaDiff                       html  
    getTextForFiltering                     html  
    getTextForGOAnalysis                    html  
    getTextForHypothesisTest                html  
    getTextForNewDataset                    html  
    getTextForNormalization                 html  
    getTextForpeptideImputation             html  
    getTextForproteinImputation             html  
    group_GO                                html  
    hc_logFC_DensityPlot                    html  
    hc_mvTypePlot2                          html  
    heatmapD                                html  
    heatmapForMissingValues                 html  
    histPValue_HC                           html  
    impute.pa2                              html  
    inner.aggregate.iter                    html  
    inner.aggregate.topn                    html  
    inner.mean                              html  
    inner.sum                               html  
    limmaCompleteTest                       html  
    listSheets                              html  
    make.contrast                           html  
    make.design.1                           html  
    make.design.2                           html  
    make.design.3                           html  
    make.design                             html  
    match.metacell                          html  
    metacell.def                            html  
    metacellHisto_HC                        html  
    metacellPerLinesHistoPerCondition_HC    html  
    metacellPerLinesHisto_HC                html  
    metacombine                             html  
    mvImage                                 html  
    my_hc_ExportMenu                        html  
    my_hc_chart                             html  
    nonzero                                 html  
    normalizeMethods.dapar                  html  
    pepa.test                               html  
    plotJitter                              html  
    plotJitter_rCharts                      html  
    plotPCA_Eigen                           html  
    plotPCA_Eigen_hc                        html  
    plotPCA_Ind                             html  
    plotPCA_Var                             html  
    postHocTest                             html  
    proportionConRev_HC                     html  
    rbindMSnset                             html  
    reIntroduceMEC                          html  
    readExcel                               html  
    removeLines                             html  
    samLRT                                  html  
    saveParameters                          html  
    scatterplotEnrichGO_HC                  html  
    search.metacell.tags                    html  
    splitAdjacencyMat                       html  
    test.design                             html  
    translatedRandomBeta                    html  
    univ_AnnotDbPkg                         html  
    violinPlotD                             html  
    visualizeClusters                       html  
    vsn                                     html  
    wrapper.CVDistD_HC                      html  
    wrapper.compareNormalizationD_HC        html  
    wrapper.corrMatrixD_HC                  html  
    wrapper.dapar.impute.mi                 html  
    wrapper.heatmapD                        html  
    wrapper.impute.KNN                      html  
    wrapper.impute.detQuant                 html  
    wrapper.impute.fixedValue               html  
    wrapper.impute.mle                      html  
    wrapper.impute.pa                       html  
    wrapper.impute.pa2                      html  
    wrapper.impute.slsa                     html  
    wrapper.mvImage                         html  
    wrapper.normalizeD                      html  
    wrapper.pca                             html  
    wrapperCalibrationPlot                  html  
    wrapperClassic1wayAnova                 html  
    wrapperRunClustering                    html  
    writeMSnsetToCSV                        html  
    writeMSnsetToExcel                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DAPAR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DAPAR' as DAPAR_1.25.0.zip
* DONE (DAPAR)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'DAPAR' successfully unpacked and MD5 sums checked