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This page was generated on 2024-07-22 12:44 -0400 (Mon, 22 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4688
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4455
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4404
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 377/2248HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ClustIRR 1.3.20  (landing page)
Simo Kitanovski
Snapshot Date: 2024-07-21 14:00 -0400 (Sun, 21 Jul 2024)
git_url: https://git.bioconductor.org/packages/ClustIRR
git_branch: devel
git_last_commit: ba07612
git_last_commit_date: 2024-07-07 18:02:18 -0400 (Sun, 07 Jul 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped


BUILD results for ClustIRR on lconway

To the developers/maintainers of the ClustIRR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ClustIRR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ClustIRR
Version: 1.3.20
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ClustIRR
StartedAt: 2024-07-21 16:16:13 -0400 (Sun, 21 Jul 2024)
EndedAt: 2024-07-21 16:20:41 -0400 (Sun, 21 Jul 2024)
EllapsedTime: 268.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ClustIRR
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* checking for file ‘ClustIRR/DESCRIPTION’ ... OK
* preparing ‘ClustIRR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘User_manual.Rmd’ using rmarkdown

Quitting from lines 706-713 [unnamed-chunk-34] (User_manual.Rmd)
Error: processing vignette 'User_manual.Rmd' failed with diagnostics:
'substitutionMatrix' must be a numeric matrix
--- failed re-building ‘User_manual.Rmd’

SUMMARY: processing the following file failed:
  ‘User_manual.Rmd’

Error: Vignette re-building failed.
Execution halted