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This page was generated on 2021-09-25 12:05:23 -0400 (Sat, 25 Sep 2021).

INSTALL results for BiocOncoTK on riesling1

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raw results

Package 161/2034HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocOncoTK 1.13.2  (landing page)
VJ Carey
Snapshot Date: 2021-09-24 14:50:08 -0400 (Fri, 24 Sep 2021)
git_url: https://git.bioconductor.org/packages/BiocOncoTK
git_branch: master
git_last_commit: 204d642
git_last_commit_date: 2021-06-25 16:24:03 -0400 (Fri, 25 Jun 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: BiocOncoTK
Version: 1.13.2
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BiocOncoTK_1.13.2.tar.gz && rm -rf BiocOncoTK.buildbin-libdir && mkdir BiocOncoTK.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocOncoTK.buildbin-libdir BiocOncoTK_1.13.2.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BiocOncoTK_1.13.2.zip && rm BiocOncoTK_1.13.2.tar.gz BiocOncoTK_1.13.2.zip
StartedAt: 2021-09-24 18:42:25 -0400 (Fri, 24 Sep 2021)
EndedAt: 2021-09-24 18:45:25 -0400 (Fri, 24 Sep 2021)
EllapsedTime: 180.2 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BiocOncoTK_1.13.2.tar.gz && rm -rf BiocOncoTK.buildbin-libdir && mkdir BiocOncoTK.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocOncoTK.buildbin-libdir BiocOncoTK_1.13.2.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BiocOncoTK_1.13.2.zip && rm BiocOncoTK_1.13.2.tar.gz BiocOncoTK_1.13.2.zip
###
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##############################################################################


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100 7800k  100 7800k    0     0  6409k      0  0:00:01  0:00:01 --:--:-- 6415k

install for i386

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'BiocOncoTK/vignettes/BiocOncoTK.Rmd' to 'BiocOncoTK/README.md'
* installing *source* package 'BiocOncoTK' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiocOncoTK'
    finding HTML links ... done
    CCLE_DRUG_BROAD                         html  
    MSIsensor.10k                           html  
    TcgaMutCounts                           html  
    TcgaNIndWithAnyMut                      html  
    add_sym                                 html  
    annotTabs                               html  
    bindMSI                                 html  
    bipg_tests                              html  
    brcaMAE                                 html  
    buildPancanSE                           html  
    cell_70138                              html  
    clueDemos                               html  
    clueServiceNames                        html  
    darmGBMcls                              html  
    dingMSI                                 html  
    featIDMapper                            html  
    fireMSI                                 html  
    get_plates                              html  
    ggFeatDens                              html  
    ggFeatureSegs                           html  
    ggMutDens                               html  
    icd10_c                                 html  
    k23sig                                  html  
    kang_DNArepair                          html  
    loadPatel                               html  
    log10pl1                                html  
    map_tcga_ncit                           html  
    mc3toGR                                 html  
    molpo_3utr                              html  
    molpo_5utr                              html  
    molpo_CDS                               html  
    molpo_WGS                               html  
    multiviz                                html  
    oncoPrintISB                            html  
    pancan.clin.varnames                    html  
    pancan_BQ                               html  
    finding level-2 HTML links ... done

    pancan_app                              html  
    pancan_clinicalTabVarnames              html  
    pancan_longname                         html  
    pancan_sampTypeMap                      html  
    pancan_tabulate                         html  
    patient_to_tumor_code                   html  
    pertClasses                             html  
    pert_70138                              html  
    query_clue                              html  
    reexports                               html  
    replaceRownames                         html  
    small_msi                               html  
    tumNorSet                               html  
    utils                                   html  
    viz_msi_raw                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'BiocOncoTK/vignettes/BiocOncoTK.Rmd' to 'BiocOncoTK/README.md'
* installing *source* package 'BiocOncoTK' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocOncoTK' as BiocOncoTK_1.13.2.zip
* DONE (BiocOncoTK)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'BiocOncoTK' successfully unpacked and MD5 sums checked