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This page was generated on 2024-07-16 17:39 -0400 (Tue, 16 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4742
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4484
merida1macOS 12.7.4 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4513
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4462
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1552/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phemd 1.20.0  (landing page)
William S Chen
Snapshot Date: 2024-07-14 14:00 -0400 (Sun, 14 Jul 2024)
git_url: https://git.bioconductor.org/packages/phemd
git_branch: RELEASE_3_19
git_last_commit: 69ceef8
git_last_commit_date: 2024-04-30 11:44:36 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped


BUILD results for phemd on nebbiolo1

To the developers/maintainers of the phemd package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/phemd.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: phemd
Version: 1.20.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data phemd
StartedAt: 2024-07-14 18:57:03 -0400 (Sun, 14 Jul 2024)
EndedAt: 2024-07-14 18:58:07 -0400 (Sun, 14 Jul 2024)
EllapsedTime: 64.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data phemd
###
##############################################################################
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* checking for file ‘phemd/DESCRIPTION’ ... OK
* preparing ‘phemd’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘phemd.Rmd’ using rmarkdown

Quitting from lines 72-74 [unnamed-chunk-4] (phemd.Rmd)
Error: processing vignette 'phemd.Rmd' failed with diagnostics:
invalid class "Phemd" object: invalid object for slot "version" in class "Phemd": got class "object", should be or extend class "package_version"
--- failed re-building ‘phemd.Rmd’

SUMMARY: processing the following file failed:
  ‘phemd.Rmd’

Error: Vignette re-building failed.
Execution halted