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This page was generated on 2024-07-19 17:37 -0400 (Fri, 19 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4742
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4484
merida1macOS 12.7.5 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4513
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4462
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 736/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowCore 2.16.0  (landing page)
Mike Jiang
Snapshot Date: 2024-07-17 14:00 -0400 (Wed, 17 Jul 2024)
git_url: https://git.bioconductor.org/packages/flowCore
git_branch: RELEASE_3_19
git_last_commit: 48fe6de
git_last_commit_date: 2024-04-30 10:16:03 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published


INSTALL results for flowCore on nebbiolo1

To the developers/maintainers of the flowCore package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowCore.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowCore
Version: 2.16.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL flowCore
StartedAt: 2024-07-17 15:10:14 -0400 (Wed, 17 Jul 2024)
EndedAt: 2024-07-17 15:10:55 -0400 (Wed, 17 Jul 2024)
EllapsedTime: 41.6 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL flowCore
###
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* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘flowCore’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c FastLogicle.cpp -o FastLogicle.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c Hyperlog.cpp -o Hyperlog.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c Logicle.cpp -o Logicle.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c biexponential.cpp -o biexponential.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c convertRawBytes.cpp -o convertRawBytes.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c cpp11.cpp -o cpp11.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c fcsTextParse.cpp -o fcsTextParse.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c hyperlogTransform.cpp -o hyperlogTransform.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c inPolygon.cpp -o inPolygon.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c inPolytope.cpp -o inPolytope.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c logicleTransform.cpp -o logicleTransform.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c poly_centroid.cpp -o poly_centroid.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c sortBytes.cpp -o sortBytes.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c uint2double.cpp -o uint2double.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c zeroin.cpp -o zeroin.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.19-bioc/R/lib -L/usr/local/lib -o flowCore.so FastLogicle.o Hyperlog.o Logicle.o biexponential.o convertRawBytes.o cpp11.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o logicleTransform.o poly_centroid.o sortBytes.o uint2double.o zeroin.o /home/biocbuild/bbs-3.19-bioc/R/site-library/cytolib/lib/libcytolib.a -L/home/biocbuild/bbs-3.19-bioc/R/lib -lR
if [ `uname -s` = 'Darwin' ]; then install_name_tool -change /usr/local/clang4/lib/libc++.1.dylib /usr/lib/libc++.1.dylib flowCore.so; fi
installing to /home/biocbuild/bbs-3.19-bioc/R/site-library/00LOCK-flowCore/00new/flowCore/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowCore)