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This page was generated on 2024-06-18 17:57 -0400 (Tue, 18 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4758
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4492
merida1macOS 12.7.4 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4464
kjohnson1macOS 13.6.6 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 571/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DifferentialRegulation 2.2.0  (landing page)
Simone Tiberi
Snapshot Date: 2024-06-16 14:00 -0400 (Sun, 16 Jun 2024)
git_url: https://git.bioconductor.org/packages/DifferentialRegulation
git_branch: RELEASE_3_19
git_last_commit: 832ee2d
git_last_commit_date: 2024-04-30 11:42:30 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


INSTALL results for DifferentialRegulation on nebbiolo1

To the developers/maintainers of the DifferentialRegulation package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DifferentialRegulation.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DifferentialRegulation
Version: 2.2.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL DifferentialRegulation
StartedAt: 2024-06-16 15:25:08 -0400 (Sun, 16 Jun 2024)
EndedAt: 2024-06-16 15:26:00 -0400 (Sun, 16 Jun 2024)
EllapsedTime: 52.8 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL DifferentialRegulation
###
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* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘DifferentialRegulation’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c Rcpp_MCMC.cpp -o Rcpp_MCMC.o
Rcpp_MCMC.cpp: In function ‘Rcpp::NumericVector Rcpp_MCMC(const unsigned int&, const unsigned int&, const unsigned int&, const unsigned int&, const IntegerVector&, const IntegerVector&, const Rcpp::ListOf<Rcpp::Vector<13> >&, const IntegerVector&, const unsigned int&, const unsigned int&, Rcpp::NumericMatrix&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const NumericMatrix&, const Rcpp::ListOf<Rcpp::ListOf<Rcpp::Vector<13> > >&, const Rcpp::ListOf<Rcpp::Vector<13> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const NumericVector&, const NumericVector&, const IntegerVector&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const IntegerVector&, const double&)’:
Rcpp_MCMC.cpp:305:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const type’ {aka ‘const int’} [-Wsign-compare]
  305 |         for(sample = 0; sample < n_samples_per_group[ gr ]; sample ++){
Rcpp_MCMC.cpp:135:10: warning: unused variable ‘tmp_1’ [-Wunused-variable]
  135 |   double tmp_1, tmp_2, tmp_3;
      |          ^~~~~
Rcpp_MCMC.cpp:135:17: warning: unused variable ‘tmp_2’ [-Wunused-variable]
  135 |   double tmp_1, tmp_2, tmp_3;
      |                 ^~~~~
Rcpp_MCMC.cpp:135:24: warning: unused variable ‘tmp_3’ [-Wunused-variable]
  135 |   double tmp_1, tmp_2, tmp_3;
      |                        ^~~~~
Rcpp_MCMC.cpp:394:10: warning: ‘ll_original’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  394 |       ll += ll_original;
      |       ~~~^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c Rcpp_MCMC_EC_US.cpp -o Rcpp_MCMC_EC_US.o
Rcpp_MCMC_EC_US.cpp: In function ‘Rcpp::NumericVector Rcpp_MCMC_EC_US(const unsigned int&, const unsigned int&, const unsigned int&, const unsigned int&, const IntegerVector&, const IntegerVector&, const Rcpp::ListOf<Rcpp::Vector<13> >&, const IntegerVector&, const unsigned int&, const unsigned int&, Rcpp::NumericMatrix&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const NumericMatrix&, const Rcpp::ListOf<Rcpp::ListOf<Rcpp::Vector<13> > >&, const Rcpp::ListOf<Rcpp::Vector<13> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const NumericVector&, const NumericVector&, const IntegerVector&, const IntegerVector&, const NumericVector&, const NumericVector&, const double&)’:
Rcpp_MCMC_EC_US.cpp:310:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const type’ {aka ‘const int’} [-Wsign-compare]
  310 |         for(sample = 0; sample < n_samples_per_group[ gr ]; sample ++){
Rcpp_MCMC_EC_US.cpp:130:10: warning: unused variable ‘tmp_1’ [-Wunused-variable]
  130 |   double tmp_1, tmp_2, tmp;
      |          ^~~~~
Rcpp_MCMC_EC_US.cpp:130:17: warning: unused variable ‘tmp_2’ [-Wunused-variable]
  130 |   double tmp_1, tmp_2, tmp;
      |                 ^~~~~
Rcpp_MCMC_EC_US.cpp:399:12: warning: ‘ll_original’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  399 |         ll += ll_original;
      |         ~~~^~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.19-bioc/R/lib -L/usr/local/lib -o DifferentialRegulation.so RcppExports.o Rcpp_MCMC.o Rcpp_MCMC_EC_US.o -llapack -L/home/biocbuild/bbs-3.19-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.19-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.19-bioc/R/site-library/00LOCK-DifferentialRegulation/00new/DifferentialRegulation/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DifferentialRegulation)