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This page was generated on 2021-10-26 15:52:19 -0400 (Tue, 26 Oct 2021).

CHECK results for yeastGSData on nebbiolo2

To the developers/maintainers of the yeastGSData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 405/408HostnameOS / ArchINSTALLBUILDCHECK
yeastGSData 0.31.0  (landing page)
R. Gentleman
Snapshot Date: 2021-10-26 09:30:02 -0400 (Tue, 26 Oct 2021)
git_url: https://git.bioconductor.org/packages/yeastGSData
git_branch: master
git_last_commit: 885bb11
git_last_commit_date: 2021-05-19 11:27:31 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: yeastGSData
Version: 0.31.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:yeastGSData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings yeastGSData_0.31.0.tar.gz
StartedAt: 2021-10-26 12:50:11 -0400 (Tue, 26 Oct 2021)
EndedAt: 2021-10-26 12:51:32 -0400 (Tue, 26 Oct 2021)
EllapsedTime: 81.1 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: yeastGSData.Rcheck
Warnings: 1

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:yeastGSData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings yeastGSData_0.31.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/yeastGSData.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘yeastGSData/DESCRIPTION’ ... OK
* this is package ‘yeastGSData’ version ‘0.31.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘yeastGSData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 65.2Mb
  sub-directories of 1Mb or more:
    extdata  64.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: BayesFactorNGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorNGS.Rd:26-27: Dropping empty section \references
prepare_Rd: BayesFactorPGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorPGS.Rd:26-27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  BayesFactorNGS.rda     46Kb     18Kb       xz
  BayesFactorPGS.rda     70Kb     32Kb       xz
  MIPSGS.rda             15Kb      9Kb       xz
  Mpact.rda             199Kb    136Kb    bzip2
  NEGGS.rda             600Kb     40Kb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/yeastGSData.Rcheck/00check.log’
for details.



Installation output

yeastGSData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL yeastGSData
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘yeastGSData’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (yeastGSData)

Tests output


Example timings

yeastGSData.Rcheck/yeastGSData-Ex.timings

nameusersystemelapsed
BayesFactorNGS0.0080.0040.012
BayesFactorPGS0.0040.0000.004
BinaryGS0.0010.0000.001
MIPSGS0.0080.0000.009
Mpact0.0350.0000.034
MpactEvidenceCodes0.0010.0000.000
NEGGS2.5770.1112.688
POSPS0.0010.0010.002
PRS000