Back to Build/check report for BioC 3.14 experimental data
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This page was generated on 2021-10-21 15:52:04 -0400 (Thu, 21 Oct 2021).

CHECK results for topdownrdata on nebbiolo2

To the developers/maintainers of the topdownrdata package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 392/406HostnameOS / ArchINSTALLBUILDCHECK
topdownrdata 1.15.0  (landing page)
Sebastian Gibb
Snapshot Date: 2021-10-21 09:30:01 -0400 (Thu, 21 Oct 2021)
git_url: https://git.bioconductor.org/packages/topdownrdata
git_branch: master
git_last_commit: 857727c
git_last_commit_date: 2021-05-19 12:02:33 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: topdownrdata
Version: 1.15.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:topdownrdata.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings topdownrdata_1.15.0.tar.gz
StartedAt: 2021-10-21 12:44:55 -0400 (Thu, 21 Oct 2021)
EndedAt: 2021-10-21 12:46:52 -0400 (Thu, 21 Oct 2021)
EllapsedTime: 116.5 seconds
RetCode: 0
Status:   OK  
CheckDir: topdownrdata.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:topdownrdata.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings topdownrdata_1.15.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/topdownrdata.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘topdownrdata/DESCRIPTION’ ... OK
* this is package ‘topdownrdata’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file paths:
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e7_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e7_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_5e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_5e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e7_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e7_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_5e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_5e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e7_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e7_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_5e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_5e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e7_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e7_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_5e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_5e6_2.experiments.csv.gz

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘topdownrdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 101.8Mb
  sub-directories of 1Mb or more:
    extdata  101.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/topdownrdata.Rcheck/00check.log’
for details.



Installation output

topdownrdata.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL topdownrdata
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘topdownrdata’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (topdownrdata)

Tests output


Example timings

topdownrdata.Rcheck/topdownrdata-Ex.timings

nameusersystemelapsed
topDownDataPath0.0000.0000.001
topdownrdata-package2.8020.1592.965