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This page was generated on 2021-10-23 15:51:47 -0400 (Sat, 23 Oct 2021).

CHECK results for optimalFlowData on nebbiolo2

To the developers/maintainers of the optimalFlowData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 264/408HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.5.0  (landing page)
Hristo Inouzhe
Snapshot Date: 2021-10-23 09:30:01 -0400 (Sat, 23 Oct 2021)
git_url: https://git.bioconductor.org/packages/optimalFlowData
git_branch: master
git_last_commit: ddd1211
git_last_commit_date: 2021-05-19 12:10:20 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: optimalFlowData
Version: 1.5.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings optimalFlowData_1.5.0.tar.gz
StartedAt: 2021-10-23 12:33:43 -0400 (Sat, 23 Oct 2021)
EndedAt: 2021-10-23 12:34:35 -0400 (Sat, 23 Oct 2021)
EllapsedTime: 52.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: optimalFlowData.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings optimalFlowData_1.5.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/optimalFlowData.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 101.0Mb
  sub-directories of 1Mb or more:
    data  100.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 100.8 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.



Installation output

optimalFlowData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL optimalFlowData
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘optimalFlowData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0250.0120.038
Cytometry100.0190.0160.035
Cytometry110.0240.0120.035
Cytometry120.0220.0120.033
Cytometry130.0320.0080.040
Cytometry140.0390.0120.051
Cytometry150.0140.0030.018
Cytometry160.0150.0040.018
Cytometry170.0580.0200.078
Cytometry180.0600.0080.067
Cytometry190.0280.0040.032
Cytometry20.0610.0040.065
Cytometry200.0550.0000.055
Cytometry210.0730.0000.073
Cytometry220.0340.0000.034
Cytometry230.0260.0040.030
Cytometry240.0280.0040.033
Cytometry250.0290.0000.030
Cytometry260.0310.0000.031
Cytometry270.0850.0160.100
Cytometry280.0810.0240.105
Cytometry290.0840.0040.088
Cytometry30.0160.0000.016
Cytometry300.0660.0000.066
Cytometry310.0580.0040.062
Cytometry320.0740.0000.074
Cytometry330.0410.0000.041
Cytometry340.1120.0040.116
Cytometry350.0500.0040.055
Cytometry360.0160.0000.017
Cytometry370.0140.0000.014
Cytometry380.0140.0000.014
Cytometry390.0100.0040.014
Cytometry40.0150.0000.016
Cytometry400.0370.0000.037
Cytometry50.0170.0000.017
Cytometry60.0140.0000.014
Cytometry70.0140.0000.014
Cytometry80.0180.0000.018
Cytometry90.0260.0000.026
buildDatabase0.4990.0400.539
cytometry.diagnosis0.0020.0000.002
noise.types0.0010.0000.001