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This page was generated on 2021-12-01 18:35:25 -0500 (Wed, 01 Dec 2021).

CHECK results for mtbls2 on nebbiolo2

To the developers/maintainers of the mtbls2 package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 248/408HostnameOS / ArchINSTALLBUILDCHECK
mtbls2 1.24.0  (landing page)
Steffen Neumann
Snapshot Date: 2021-12-01 08:30:01 -0500 (Wed, 01 Dec 2021)
git_url: https://git.bioconductor.org/packages/mtbls2
git_branch: RELEASE_3_14
git_last_commit: 164156c
git_last_commit_date: 2021-10-26 12:16:31 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: mtbls2
Version: 1.24.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:mtbls2.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings mtbls2_1.24.0.tar.gz
StartedAt: 2021-12-01 15:29:18 -0500 (Wed, 01 Dec 2021)
EndedAt: 2021-12-01 15:31:54 -0500 (Wed, 01 Dec 2021)
EllapsedTime: 156.6 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: mtbls2.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:mtbls2.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings mtbls2_1.24.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/mtbls2.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mtbls2/DESCRIPTION’ ... OK
* this is package ‘mtbls2’ version ‘1.24.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mtbls2’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 510.8Mb
  sub-directories of 1Mb or more:
    R         4.6Mb
    data      3.0Mb
    mzData  185.6Mb
    mzML    313.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘MTBLS2-xcms3.Rmd-disable’, ‘MTBLS2.Rmd-disable’,
    ‘MTBLS2.Rmd-disabled’, ‘MTBLS2.bib’,
    ‘mtbls2diffreport_box/001.png’, ‘mtbls2diffreport_box/002.png’,
    ‘mtbls2diffreport_box/003.png’, ‘mtbls2diffreport_box/004.png’,
    ‘mtbls2diffreport_box/005.png’, ‘mtbls2diffreport_box/006.png’,
    ‘mtbls2diffreport_box/007.png’, ‘mtbls2diffreport_box/008.png’,
    ‘mtbls2diffreport_box/009.png’, ‘mtbls2diffreport_box/010.png’,
    ‘mtbls2diffreport_box/011.png’, ‘mtbls2diffreport_box/012.png’,
    ‘mtbls2diffreport_box/013.png’, ‘mtbls2diffreport_box/014.png’,
    ‘mtbls2diffreport_box/015.png’, ‘mtbls2diffreport_box/016.png’,
    ‘mtbls2diffreport_box/017.png’, ‘mtbls2diffreport_box/018.png’,
    ‘mtbls2diffreport_box/019.png’, ‘mtbls2diffreport_box/020.png’,
    ‘mtbls2diffreport_eic/001.png’, ‘mtbls2diffreport_eic/002.png’,
    ‘mtbls2diffreport_eic/003.png’, ‘mtbls2diffreport_eic/004.png’,
    ‘mtbls2diffreport_eic/005.png’, ‘mtbls2diffreport_eic/006.png’,
    ‘mtbls2diffreport_eic/007.png’, ‘mtbls2diffreport_eic/008.png’,
    ‘mtbls2diffreport_eic/009.png’, ‘mtbls2diffreport_eic/010.png’,
    ‘mtbls2diffreport_eic/011.png’, ‘mtbls2diffreport_eic/012.png’,
    ‘mtbls2diffreport_eic/013.png’, ‘mtbls2diffreport_eic/014.png’,
    ‘mtbls2diffreport_eic/015.png’, ‘mtbls2diffreport_eic/016.png’,
    ‘mtbls2diffreport_eic/017.png’, ‘mtbls2diffreport_eic/018.png’,
    ‘mtbls2diffreport_eic/019.png’, ‘mtbls2diffreport_eic/020.png’
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/mtbls2.Rcheck/00check.log’
for details.



Installation output

mtbls2.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL mtbls2
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘mtbls2’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mtbls2)

Tests output


Example timings

mtbls2.Rcheck/mtbls2-Ex.timings

nameusersystemelapsed
mtbls20.3430.0160.359