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This page was generated on 2021-10-16 15:51:46 -0400 (Sat, 16 Oct 2021).

CHECK results for msdata on nebbiolo2

To the developers/maintainers of the msdata package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 241/404HostnameOS / ArchINSTALLBUILDCHECK
msdata 0.33.2  (landing page)
Steffen Neumann , Laurent Gatto
Snapshot Date: 2021-10-16 09:30:02 -0400 (Sat, 16 Oct 2021)
git_url: https://git.bioconductor.org/packages/msdata
git_branch: master
git_last_commit: a386daf
git_last_commit_date: 2021-10-11 04:06:38 -0400 (Mon, 11 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: msdata
Version: 0.33.2
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:msdata.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings msdata_0.33.2.tar.gz
StartedAt: 2021-10-16 12:25:25 -0400 (Sat, 16 Oct 2021)
EndedAt: 2021-10-16 12:26:41 -0400 (Sat, 16 Oct 2021)
EllapsedTime: 75.8 seconds
RetCode: 0
Status:   OK  
CheckDir: msdata.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:msdata.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings msdata_0.33.2.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/msdata.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘msdata/DESCRIPTION’ ... OK
* this is package ‘msdata’ version ‘0.33.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘msdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 623.6Mb
  sub-directories of 1Mb or more:
    TripleTOF-SWATH  106.6Mb
    cdf                3.5Mb
    fticr              5.8Mb
    fticr-mzML         8.8Mb
    ident              9.4Mb
    iontrap           55.3Mb
    lockmass           4.1Mb
    microtofq         16.8Mb
    mzid               3.9Mb
    proteomics       368.2Mb
    quant              6.8Mb
    sciex             34.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
msdata 7.511  0.368   7.887
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/msdata.Rcheck/00check.log’
for details.



Installation output

msdata.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL msdata
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘msdata’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (msdata)

Tests output


Example timings

msdata.Rcheck/msdata-Ex.timings

nameusersystemelapsed
msdata7.5110.3687.887
proteomics0.7090.0120.743
sciexdata0.0010.0000.000