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This page was generated on 2021-10-26 15:52:18 -0400 (Tue, 26 Oct 2021).

CHECK results for miRNATarget on nebbiolo2

To the developers/maintainers of the miRNATarget package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 233/408HostnameOS / ArchINSTALLBUILDCHECK
miRNATarget 1.31.0  (landing page)
Y-h. Taguchi
Snapshot Date: 2021-10-26 09:30:02 -0400 (Tue, 26 Oct 2021)
git_url: https://git.bioconductor.org/packages/miRNATarget
git_branch: master
git_last_commit: e9fd0af
git_last_commit_date: 2021-05-19 11:34:14 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: miRNATarget
Version: 1.31.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings miRNATarget_1.31.0.tar.gz
StartedAt: 2021-10-26 12:30:40 -0400 (Tue, 26 Oct 2021)
EndedAt: 2021-10-26 12:31:46 -0400 (Tue, 26 Oct 2021)
EllapsedTime: 66.5 seconds
RetCode: 0
Status:   OK  
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings miRNATarget_1.31.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/miRNATarget.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.31.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.



Installation output

miRNATarget.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL miRNATarget
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘miRNATarget’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miRNATarget)

Tests output


Example timings

miRNATarget.Rcheck/miRNATarget-Ex.timings

nameusersystemelapsed
HS_conv_id0.0580.0010.058
HS_refseq_to_affy_hc_g1100.0040.0000.003
HS_refseq_to_affy_hg_focus0.0150.0000.015
HS_refseq_to_affy_hg_u133_plus_20.050.000.05
HS_refseq_to_affy_hg_u133a0.0300.0000.029
HS_refseq_to_affy_hg_u133a_20.0290.0000.029
HS_refseq_to_affy_hg_u133b0.0140.0000.015
HS_refseq_to_affy_hg_u95a0.0160.0030.020
HS_refseq_to_affy_hg_u95av20.0170.0000.017
HS_refseq_to_affy_hg_u95b0.0080.0040.012
HS_refseq_to_affy_hg_u95c0.0090.0000.009
HS_refseq_to_affy_hg_u95d0.0050.0000.005
HS_refseq_to_affy_hg_u95e0.0080.0000.008
HS_refseq_to_affy_huex_1_0_st_v20.8160.0190.837
HS_refseq_to_affy_hugene_1_0_st_v10.0410.0040.045
HS_refseq_to_affy_hugenefl0.0120.0000.012
HS_refseq_to_affy_u133_x3p0.0650.0010.066
HS_refseq_to_agilent_cgh_44b0.0120.0000.012
HS_refseq_to_agilent_wholegenome0.0580.0030.061
HS_refseq_to_canonical_transcript_stable_id0.0620.0000.062
HS_refseq_to_ccds0.0320.0040.037
HS_refseq_to_codelink0.0380.0000.037
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0020.0000.001
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0010.001
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.001
HS_refseq_to_embl0.6580.0160.674
HS_refseq_to_ensembl_exon_id0.0020.0000.001
HS_refseq_to_ensembl_gene_id0.0420.0000.042
HS_refseq_to_ensembl_peptide_id0.0380.0000.038
HS_refseq_to_ensembl_transcript_id0.0430.0030.048
HS_refseq_to_entrezgene0.040.000.04
HS_refseq_to_hgnc_id0.1750.0000.174
HS_refseq_to_hgnc_symbol0.0380.0000.038
HS_refseq_to_hgnc_transcript_name0.0400.0000.041
HS_refseq_to_illumina_humanht_120.0390.0030.043
HS_refseq_to_illumina_humanwg_6_v10.0320.0040.036
HS_refseq_to_illumina_humanwg_6_v20.0290.0010.029
HS_refseq_to_illumina_humanwg_6_v30.0340.0000.034
HS_refseq_to_interpro0.0970.0000.096
HS_refseq_to_ipi0.0890.0000.089
HS_refseq_to_merops0.0030.0000.004
HS_refseq_to_pdb0.0680.0000.069
HS_refseq_to_pfam0.0540.0000.053
HS_refseq_to_phalanx_onearray0.0330.0000.033
HS_refseq_to_protein_id1.0150.0001.015
HS_refseq_to_refseq_dna0.0410.0000.041
HS_refseq_to_refseq_genomic0.0010.0000.001
HS_refseq_to_refseq_peptide0.0700.0000.071
HS_refseq_to_rfam0.0020.0000.001
HS_refseq_to_rfam_gene_name0.0010.0000.000
HS_refseq_to_rfam_transcript_name0.0010.0000.000
HS_refseq_to_smart0.0220.0030.025
HS_refseq_to_tigrfam0.0040.0000.004
HS_refseq_to_ucsc0.0430.0000.042
HS_refseq_to_unigene0.0440.0040.048
HS_refseq_to_uniprot_genename0.0320.0000.033
HS_refseq_to_uniprot_genename_transcript_name0.0010.0010.001
HS_refseq_to_uniprot_sptrembl0.0010.0000.001
HS_refseq_to_uniprot_swissprot0.0000.0000.001
HS_refseq_to_uniprot_swissprot_accession0.0000.0000.001
HS_refseq_to_wikigene_id0.0000.0000.001
HS_refseq_to_wikigene_name0.0290.0060.036
MM_conv_id0.0020.0010.002
MM_refseq_to_affy_mg_u74a0.0130.0000.012
MM_refseq_to_affy_mg_u74av20.0110.0000.010
MM_refseq_to_affy_mg_u74b0.0060.0030.009
MM_refseq_to_affy_mg_u74bv20.0090.0000.008
MM_refseq_to_affy_mg_u74c0.0030.0000.003
MM_refseq_to_affy_mg_u74cv20.0040.0000.005
MM_refseq_to_affy_moe430a0.0200.0040.024
MM_refseq_to_affy_moe430b0.0110.0000.012
MM_refseq_to_affy_moex_1_0_st_v10.2850.0030.289
MM_refseq_to_affy_mogene_1_0_st_v10.0290.0000.030
MM_refseq_to_affy_mouse430_20.0310.0000.032
MM_refseq_to_affy_mouse430a_20.0220.0000.023
MM_refseq_to_affy_mu11ksuba0.0070.0000.008
MM_refseq_to_affy_mu11ksubb0.0050.0000.006
MM_refseq_to_agilent_wholegenome0.0390.0030.044
MM_refseq_to_canonical_transcript_stable_id0.0430.0000.043
MM_refseq_to_ccds0.0190.0030.022
MM_refseq_to_codelink0.0250.0000.024
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0010.0010.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.001
MM_refseq_to_embl0.2290.0030.233
MM_refseq_to_ensembl_exon_id0.0010.0000.002
MM_refseq_to_ensembl_gene_id0.1440.0000.143
MM_refseq_to_ensembl_peptide_id0.0280.0000.028
MM_refseq_to_ensembl_transcript_id0.0310.0000.031
MM_refseq_to_entrezgene0.0250.0040.028
MM_refseq_to_fantom0.0820.0000.082
MM_refseq_to_illumina_mousewg_6_v10.0360.0040.040
MM_refseq_to_illumina_mousewg_6_v20.0390.0000.038
MM_refseq_to_interpro0.0770.0000.076
MM_refseq_to_ipi0.0010.0000.001
MM_refseq_to_merops0.0030.0000.003
MM_refseq_to_mgi_id0.0300.0010.029
MM_refseq_to_mgi_symbol0.030.000.03
MM_refseq_to_mgi_transcript_name0.0330.0000.033
MM_refseq_to_pdb0.0080.0000.008
MM_refseq_to_pfam0.0450.0000.044
MM_refseq_to_phalanx_onearray0.0320.0000.031
MM_refseq_to_protein_id0.2280.0000.228
MM_refseq_to_refseq_dna0.0350.0000.035
MM_refseq_to_refseq_peptide0.0620.0000.061
MM_refseq_to_rfam0.0010.0000.001
MM_refseq_to_rfam_gene_name0.0010.0000.001
MM_refseq_to_rfam_transcript_name0.0010.0000.000
MM_refseq_to_smart0.0230.0000.022
MM_refseq_to_tigrfam0.0040.0000.004
MM_refseq_to_ucsc0.0350.0000.035
MM_refseq_to_unigene0.0490.0000.050
MM_refseq_to_uniprot_genename0.0320.0000.032
MM_refseq_to_uniprot_genename_transcript_name0.0020.0000.001
MM_refseq_to_uniprot_sptrembl0.0010.0000.001
MM_refseq_to_uniprot_swissprot0.0010.0000.001
MM_refseq_to_uniprot_swissprot_accession0.0010.0000.001
MM_refseq_to_wikigene_id0.0010.0000.001
MM_refseq_to_wikigene_name0.030.000.03
TBL21.1540.1041.259
TBL2_HS1.1570.1311.288
TBL2_MM0.6790.1130.791
conv_id0.0000.0040.004
id_conv0.0340.0000.034