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This page was generated on 2021-10-16 15:51:46 -0400 (Sat, 16 Oct 2021).

CHECK results for kidpack on nebbiolo2

To the developers/maintainers of the kidpack package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 194/404HostnameOS / ArchINSTALLBUILDCHECK
kidpack 1.35.0  (landing page)
Wolfgang Huber
Snapshot Date: 2021-10-16 09:30:02 -0400 (Sat, 16 Oct 2021)
git_url: https://git.bioconductor.org/packages/kidpack
git_branch: master
git_last_commit: 04efdfa
git_last_commit_date: 2021-05-19 11:25:27 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: kidpack
Version: 1.35.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:kidpack.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings kidpack_1.35.0.tar.gz
StartedAt: 2021-10-16 12:20:25 -0400 (Sat, 16 Oct 2021)
EndedAt: 2021-10-16 12:20:50 -0400 (Sat, 16 Oct 2021)
EllapsedTime: 25.9 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: kidpack.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:kidpack.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings kidpack_1.35.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/kidpack.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘kidpack/DESCRIPTION’ ... OK
* this is package ‘kidpack’ version ‘1.35.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘kidpack’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 20.1Mb
  sub-directories of 1Mb or more:
    data  19.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘Biobase’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘kidpack/R/zzz.R’:
  .onLoad calls:
    message(sprintf("\n*** Deprecation warning ***:\nThe package '%s' is deprecated and will not be supported after Bioconductor release 2.1.\n\n",     pkgname))

Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
See section ‘Good practice’ in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: large data files saved inefficiently:
                 size ASCII compress
  cloneanno.rda 742Kb FALSE     none
  spotanno.rda  1.4Mb FALSE     none
  Warning: package needs dependence on R (>= 2.10)
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/kidpack.Rcheck/00check.log’
for details.



Installation output

kidpack.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL kidpack
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘kidpack’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location

*** Deprecation warning ***:
The package 'kidpack' is deprecated and will not be supported after Bioconductor release 2.1.


** testing if installed package can be loaded from final location

*** Deprecation warning ***:
The package 'kidpack' is deprecated and will not be supported after Bioconductor release 2.1.


** testing if installed package keeps a record of temporary installation path
* DONE (kidpack)

Tests output


Example timings

kidpack.Rcheck/kidpack-Ex.timings

nameusersystemelapsed
eset0.2420.0040.246
qua0.7650.0360.801