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This page was generated on 2021-12-01 18:35:25 -0500 (Wed, 01 Dec 2021).

CHECK results for geneLenDataBase on nebbiolo2

To the developers/maintainers of the geneLenDataBase package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 140/408HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.30.0  (landing page)
Matthew Young , Nadia Davidson
Snapshot Date: 2021-12-01 08:30:01 -0500 (Wed, 01 Dec 2021)
git_url: https://git.bioconductor.org/packages/geneLenDataBase
git_branch: RELEASE_3_14
git_last_commit: b3cc755
git_last_commit_date: 2021-10-26 11:45:27 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: geneLenDataBase
Version: 1.30.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings geneLenDataBase_1.30.0.tar.gz
StartedAt: 2021-12-01 15:19:46 -0500 (Wed, 01 Dec 2021)
EndedAt: 2021-12-01 15:27:02 -0500 (Wed, 01 Dec 2021)
EllapsedTime: 436.1 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings geneLenDataBase_1.30.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0620.0040.066
anoCar1.genscan.LENGTH0.0400.0040.044
anoCar1.xenoRefGene.LENGTH0.6420.0110.654
anoGam1.ensGene.LENGTH0.0480.0000.048
anoGam1.geneid.LENGTH0.0340.0000.034
anoGam1.genscan.LENGTH0.0310.0000.031
apiMel1.genscan.LENGTH0.0280.0000.028
apiMel2.ensGene.LENGTH0.0610.0040.065
apiMel2.geneid.LENGTH0.0370.0000.037
apiMel2.genscan.LENGTH0.0920.0000.092
aplCal1.xenoRefGene.LENGTH0.2860.0140.301
bosTau2.geneSymbol.LENGTH0.0320.0000.032
bosTau2.geneid.LENGTH0.1750.0110.187
bosTau2.genscan.LENGTH0.0660.0010.066
bosTau2.refGene.LENGTH0.0290.0030.032
bosTau2.sgpGene.LENGTH0.1520.0200.172
bosTau3.ensGene.LENGTH0.0710.0000.072
bosTau3.geneSymbol.LENGTH0.0260.0000.026
bosTau3.geneid.LENGTH0.0770.0000.077
bosTau3.genscan.LENGTH0.050.000.05
bosTau3.refGene.LENGTH0.0240.0000.024
bosTau3.sgpGene.LENGTH0.0670.0000.067
bosTau4.ensGene.LENGTH0.0780.0000.078
bosTau4.geneSymbol.LENGTH0.0250.0000.025
bosTau4.genscan.LENGTH0.050.000.05
bosTau4.nscanGene.LENGTH0.0220.0000.022
bosTau4.refGene.LENGTH0.0230.0000.023
braFlo1.xenoRefGene.LENGTH0.2750.0000.275
caeJap1.xenoRefGene.LENGTH0.2490.0000.249
caePb1.xenoRefGene.LENGTH0.3170.0000.317
caePb2.xenoRefGene.LENGTH0.3070.0000.307
caeRem2.xenoRefGene.LENGTH0.380.000.38
caeRem3.xenoRefGene.LENGTH0.2590.0040.263
calJac1.genscan.LENGTH0.0720.0000.072
calJac1.nscanGene.LENGTH0.0880.0000.088
calJac1.xenoRefGene.LENGTH0.530.000.53
canFam1.ensGene.LENGTH0.090.000.09
canFam1.geneSymbol.LENGTH0.0010.0030.005
canFam1.genscan.LENGTH0.0470.0050.051
canFam1.nscanGene.LENGTH0.0530.0000.053
canFam1.refGene.LENGTH0.0040.0000.004
canFam1.xenoRefGene.LENGTH0.5730.0080.581
canFam2.ensGene.LENGTH0.0770.0000.078
canFam2.geneSymbol.LENGTH0.0050.0000.005
canFam2.genscan.LENGTH0.0480.0000.048
canFam2.nscanGene.LENGTH0.0490.0000.050
canFam2.refGene.LENGTH0.0040.0000.004
canFam2.xenoRefGene.LENGTH0.3990.0000.399
cavPor3.ensGene.LENGTH0.070.000.07
cavPor3.genscan.LENGTH0.0790.0000.078
cavPor3.nscanGene.LENGTH0.0540.0000.054
cavPor3.xenoRefGene.LENGTH0.4340.0040.437
cb1.xenoRefGene.LENGTH0.3040.0000.303
cb3.xenoRefGene.LENGTH0.3380.0040.342
ce2.geneSymbol.LENGTH0.0550.0000.055
ce2.geneid.LENGTH0.0460.0000.047
ce2.refGene.LENGTH0.0530.0000.053
ce4.geneSymbol.LENGTH0.0540.0000.054
ce4.refGene.LENGTH0.0450.0040.049
ce4.xenoRefGene.LENGTH0.0620.0000.062
ce6.ensGene.LENGTH0.0680.0000.069
ce6.geneSymbol.LENGTH0.0530.0000.053
ce6.refGene.LENGTH0.0500.0000.051
ce6.xenoRefGene.LENGTH0.0640.0000.064
ci1.geneSymbol.LENGTH0.0040.0000.004
ci1.refGene.LENGTH0.0040.0000.003
ci1.xenoRefGene.LENGTH0.1330.0000.133
ci2.ensGene.LENGTH0.0490.0000.050
ci2.geneSymbol.LENGTH0.0040.0000.004
ci2.refGene.LENGTH0.0030.0000.004
ci2.xenoRefGene.LENGTH0.2100.0000.211
danRer3.ensGene.LENGTH0.0810.0000.081
danRer3.geneSymbol.LENGTH0.0440.0000.043
danRer3.refGene.LENGTH0.0410.0000.040
danRer4.ensGene.LENGTH0.2340.0000.235
danRer4.geneSymbol.LENGTH0.0470.0000.047
danRer4.genscan.LENGTH0.0530.0000.053
danRer4.nscanGene.LENGTH0.0800.0000.079
danRer4.refGene.LENGTH0.0410.0000.040
danRer5.ensGene.LENGTH0.0950.0000.094
danRer5.geneSymbol.LENGTH0.0360.0040.040
danRer5.refGene.LENGTH0.0370.0000.036
danRer5.vegaGene.LENGTH0.0420.0000.041
danRer5.vegaPseudoGene.LENGTH0.0020.0000.002
danRer6.ensGene.LENGTH0.0940.0000.094
danRer6.geneSymbol.LENGTH0.0460.0000.046
danRer6.refGene.LENGTH0.0370.0000.037
danRer6.xenoRefGene.LENGTH0.3990.0000.398
dm1.geneSymbol.LENGTH0.8140.2001.014
dm1.genscan.LENGTH0.0170.0000.017
dm1.refGene.LENGTH0.0430.0000.043
dm2.geneSymbol.LENGTH0.0500.0000.049
dm2.geneid.LENGTH0.0250.0000.024
dm2.genscan.LENGTH0.0130.0030.017
dm2.nscanGene.LENGTH0.0360.0000.036
dm2.refGene.LENGTH0.0440.0000.045
dm3.geneSymbol.LENGTH0.0520.0000.052
dm3.nscanPasaGene.LENGTH0.0370.0000.038
dm3.refGene.LENGTH0.0460.0000.046
dp2.genscan.LENGTH0.0240.0000.023
dp2.xenoRefGene.LENGTH0.1440.0000.143
dp3.geneid.LENGTH0.0290.0000.028
dp3.genscan.LENGTH0.0150.0040.019
dp3.xenoRefGene.LENGTH0.0820.0000.082
droAna1.geneid.LENGTH0.0490.0000.049
droAna1.genscan.LENGTH0.0180.0000.018
droAna1.xenoRefGene.LENGTH0.1540.0000.153
droAna2.genscan.LENGTH0.0400.0000.039
droAna2.xenoRefGene.LENGTH0.1940.0000.193
droEre1.genscan.LENGTH0.0220.0000.022
droEre1.xenoRefGene.LENGTH0.1930.0000.193
droGri1.genscan.LENGTH0.0310.0000.030
droGri1.xenoRefGene.LENGTH0.1950.0040.199
droMoj1.geneid.LENGTH0.0950.0000.095
droMoj1.genscan.LENGTH0.0400.0040.045
droMoj1.xenoRefGene.LENGTH0.1590.0000.159
droMoj2.genscan.LENGTH0.0280.0000.028
droMoj2.xenoRefGene.LENGTH0.1980.0000.198
droPer1.genscan.LENGTH0.0270.0020.030
droPer1.xenoRefGene.LENGTH0.1960.0040.200
droSec1.genscan.LENGTH0.0220.0000.022
droSec1.xenoRefGene.LENGTH0.1900.0000.191
droSim1.geneid.LENGTH0.0280.0000.029
droSim1.genscan.LENGTH0.0190.0000.019
droSim1.xenoRefGene.LENGTH0.160.000.16
droVir1.geneid.LENGTH0.0790.0000.080
droVir1.genscan.LENGTH0.0330.0000.033
droVir1.xenoRefGene.LENGTH0.2050.0000.205
droVir2.genscan.LENGTH0.0270.0000.026
droVir2.xenoRefGene.LENGTH0.1820.0000.182
droYak1.geneid.LENGTH0.0320.0000.032
droYak1.genscan.LENGTH0.0220.0000.022
droYak1.xenoRefGene.LENGTH0.1530.0040.157
droYak2.genscan.LENGTH0.0160.0040.020
droYak2.xenoRefGene.LENGTH0.1760.0040.180
equCab1.geneSymbol.LENGTH0.0040.0000.004
equCab1.geneid.LENGTH0.0610.0000.061
equCab1.nscanGene.LENGTH0.030.000.03
equCab1.refGene.LENGTH0.0030.0000.004
equCab1.sgpGene.LENGTH0.0520.0000.053
equCab2.ensGene.LENGTH0.0840.0000.084
equCab2.geneSymbol.LENGTH0.0060.0000.006
equCab2.nscanGene.LENGTH0.0430.0000.042
equCab2.refGene.LENGTH0.0060.0000.006
equCab2.xenoRefGene.LENGTH0.4450.0000.445
felCat3.ensGene.LENGTH0.0850.0000.085
felCat3.geneSymbol.LENGTH0.0030.0000.003
felCat3.geneid.LENGTH0.4000.0070.408
felCat3.genscan.LENGTH0.0980.0010.098
felCat3.nscanGene.LENGTH0.0810.0000.081
felCat3.refGene.LENGTH0.0040.0000.004
felCat3.sgpGene.LENGTH0.3030.0000.303
felCat3.xenoRefGene.LENGTH0.8150.0000.815
fr1.ensGene.LENGTH0.060.000.06
fr1.genscan.LENGTH0.0460.0000.046
fr2.ensGene.LENGTH0.0990.0000.099
galGal2.ensGene.LENGTH0.0440.0000.044
galGal2.geneSymbol.LENGTH0.0130.0000.013
galGal2.geneid.LENGTH0.0330.0000.033
galGal2.genscan.LENGTH0.0420.0000.042
galGal2.refGene.LENGTH0.0130.0000.013
galGal2.sgpGene.LENGTH0.0380.0000.038
galGal3.ensGene.LENGTH0.0590.0000.059
galGal3.geneSymbol.LENGTH0.0100.0030.014
galGal3.genscan.LENGTH0.0390.0010.039
galGal3.nscanGene.LENGTH0.0590.0000.058
galGal3.refGene.LENGTH0.0120.0000.012
galGal3.xenoRefGene.LENGTH0.3560.0000.356
gasAcu1.ensGene.LENGTH0.0720.0000.072
gasAcu1.nscanGene.LENGTH0.2950.0000.295
hg16.acembly.LENGTH0.2670.0000.267
hg16.ensGene.LENGTH0.0540.0000.054
hg16.exoniphy.LENGTH0.1820.0000.182
hg16.geneSymbol.LENGTH0.0770.0000.077
hg16.geneid.LENGTH0.0410.0000.041
hg16.genscan.LENGTH0.0470.0000.047
hg16.knownGene.LENGTH0.0860.0000.086
hg16.refGene.LENGTH0.0670.0000.067
hg16.sgpGene.LENGTH0.0370.0040.041
hg17.acembly.LENGTH0.3240.0000.323
hg17.acescan.LENGTH0.0090.0000.009
hg17.ccdsGene.LENGTH0.0190.0000.019
hg17.ensGene.LENGTH0.0800.0040.084
hg17.exoniphy.LENGTH0.3260.0000.326
hg17.geneSymbol.LENGTH0.0760.0000.077
hg17.geneid.LENGTH0.0510.0030.055
hg17.genscan.LENGTH0.0450.0010.044
hg17.knownGene.LENGTH0.0810.0000.080
hg17.refGene.LENGTH0.0730.0000.073
hg17.sgpGene.LENGTH0.0500.0000.051
hg17.vegaGene.LENGTH0.0330.0000.034
hg17.vegaPseudoGene.LENGTH0.0150.0000.015
hg17.xenoRefGene.LENGTH0.1570.0000.157
hg18.acembly.LENGTH0.5830.0070.592
hg18.acescan.LENGTH0.0090.0010.009
hg18.ccdsGene.LENGTH0.0260.0030.031
hg18.ensGene.LENGTH0.1670.0000.167
hg18.exoniphy.LENGTH0.3580.0000.358
hg18.geneSymbol.LENGTH0.0810.0000.081
hg18.geneid.LENGTH0.0620.0010.062
hg18.genscan.LENGTH0.0510.0000.050
hg18.knownGene.LENGTH0.1180.0000.117
hg18.knownGeneOld3.LENGTH0.0550.0000.055
hg18.refGene.LENGTH0.0740.0000.074
hg18.sgpGene.LENGTH0.0630.0000.062
hg18.sibGene.LENGTH1.7010.0071.709
hg18.xenoRefGene.LENGTH0.2560.0000.256
hg19.ccdsGene.LENGTH0.0320.0000.032
hg19.ensGene.LENGTH0.2140.0000.213
hg19.exoniphy.LENGTH0.2780.0000.277
hg19.geneSymbol.LENGTH0.0720.0000.072
hg19.knownGene.LENGTH0.1180.0000.119
hg19.nscanGene.LENGTH0.1020.0000.103
hg19.refGene.LENGTH0.0680.0000.069
hg19.xenoRefGene.LENGTH0.2690.0080.276
loxAfr3.xenoRefGene.LENGTH0.5380.0000.538
mm7.ensGene.LENGTH0.0890.0000.089
mm7.geneSymbol.LENGTH0.0660.0040.069
mm7.geneid.LENGTH0.0610.0000.061
mm7.genscan.LENGTH0.0490.0000.049
mm7.knownGene.LENGTH0.0750.0000.075
mm7.refGene.LENGTH0.0660.0000.066
mm7.sgpGene.LENGTH0.0540.0000.055
mm7.xenoRefGene.LENGTH0.2260.0000.226
mm8.ccdsGene.LENGTH0.0150.0030.018
mm8.ensGene.LENGTH0.0610.0000.061
mm8.geneSymbol.LENGTH0.0720.0000.071
mm8.geneid.LENGTH0.0500.0010.049
mm8.genscan.LENGTH0.0420.0000.041
mm8.knownGene.LENGTH0.0660.0000.065
mm8.nscanGene.LENGTH0.0470.0000.047
mm8.refGene.LENGTH0.0630.0000.063
mm8.sgpGene.LENGTH0.0510.0000.051
mm8.sibGene.LENGTH0.2050.0000.204
mm8.xenoRefGene.LENGTH0.2690.0000.269
mm9.acembly.LENGTH0.2420.0070.250
mm9.ccdsGene.LENGTH0.0200.0040.023
mm9.ensGene.LENGTH0.1140.0010.113
mm9.exoniphy.LENGTH0.5710.0000.571
mm9.geneSymbol.LENGTH0.0630.0030.067
mm9.geneid.LENGTH0.0580.0030.062
mm9.genscan.LENGTH0.0490.0000.049
mm9.knownGene.LENGTH0.0810.0000.081
mm9.nscanGene.LENGTH0.0450.0000.046
mm9.refGene.LENGTH0.0620.0000.062
mm9.sgpGene.LENGTH0.0560.0000.056
mm9.xenoRefGene.LENGTH0.2610.0000.261
monDom1.genscan.LENGTH0.0480.0000.048
monDom4.ensGene.LENGTH0.0540.0000.054
monDom4.geneSymbol.LENGTH0.0000.0020.003
monDom4.genscan.LENGTH0.0400.0000.041
monDom4.nscanGene.LENGTH0.0430.0000.043
monDom4.refGene.LENGTH0.0020.0000.002
monDom4.xenoRefGene.LENGTH0.2360.0000.236
monDom5.ensGene.LENGTH0.0870.0000.087
monDom5.geneSymbol.LENGTH0.0030.0000.003
monDom5.genscan.LENGTH0.0460.0000.046
monDom5.nscanGene.LENGTH0.0880.0000.088
monDom5.refGene.LENGTH0.0030.0000.003
monDom5.xenoRefGene.LENGTH0.4350.0000.435
ornAna1.ensGene.LENGTH0.0780.0000.078
ornAna1.geneSymbol.LENGTH0.0030.0000.003
ornAna1.refGene.LENGTH0.0020.0000.002
ornAna1.xenoRefGene.LENGTH0.4460.0000.446
oryLat2.ensGene.LENGTH0.0680.0000.068
oryLat2.geneSymbol.LENGTH0.0040.0000.004
oryLat2.refGene.LENGTH0.0030.0000.003
oryLat2.xenoRefGene.LENGTH0.3970.0000.397
panTro1.ensGene.LENGTH0.0860.0000.085
panTro1.geneid.LENGTH0.0430.0000.043
panTro1.genscan.LENGTH0.0460.0040.050
panTro1.xenoRefGene.LENGTH0.2840.0000.284
panTro2.ensGene.LENGTH0.0890.0000.090
panTro2.geneSymbol.LENGTH0.0680.0080.076
panTro2.genscan.LENGTH0.0480.0040.052
panTro2.nscanGene.LENGTH0.0530.0000.053
panTro2.refGene.LENGTH0.0790.0000.079
panTro2.xenoRefGene.LENGTH0.3680.0000.367
petMar1.xenoRefGene.LENGTH0.1990.0000.199
ponAbe2.ensGene.LENGTH0.0670.0000.068
ponAbe2.geneSymbol.LENGTH0.010.000.01
ponAbe2.genscan.LENGTH0.0520.0000.052
ponAbe2.nscanGene.LENGTH0.0480.0000.048
ponAbe2.refGene.LENGTH0.0090.0000.009
ponAbe2.xenoRefGene.LENGTH0.4460.0000.445
priPac1.xenoRefGene.LENGTH0.2470.0000.246
rheMac2.ensGene.LENGTH0.1000.0080.108
rheMac2.geneSymbol.LENGTH0.0040.0000.004
rheMac2.geneid.LENGTH0.0570.0000.057
rheMac2.nscanGene.LENGTH0.0450.0000.045
rheMac2.refGene.LENGTH0.0040.0000.004
rheMac2.sgpGene.LENGTH0.0530.0000.054
rheMac2.xenoRefGene.LENGTH0.7100.0000.711
rn3.ensGene.LENGTH0.0730.0000.074
rn3.geneSymbol.LENGTH0.0350.0040.040
rn3.geneid.LENGTH0.0360.0040.040
rn3.genscan.LENGTH0.0500.0000.049
rn3.knownGene.LENGTH0.0180.0000.018
rn3.nscanGene.LENGTH0.0460.0000.046
rn3.refGene.LENGTH0.0390.0000.039
rn3.sgpGene.LENGTH0.0430.0000.043
rn3.xenoRefGene.LENGTH0.3640.0000.365
rn4.ensGene.LENGTH0.0970.0000.098
rn4.geneSymbol.LENGTH0.0410.0000.042
rn4.geneid.LENGTH0.0700.0000.071
rn4.genscan.LENGTH0.0450.0000.046
rn4.knownGene.LENGTH0.0140.0040.019
rn4.nscanGene.LENGTH0.0400.0000.041
rn4.refGene.LENGTH0.0380.0000.039
rn4.sgpGene.LENGTH0.0630.0000.063
rn4.xenoRefGene.LENGTH0.2380.0000.237
sacCer1.ensGene.LENGTH0.0150.0000.014
sacCer2.ensGene.LENGTH0.0140.0000.014
strPur1.geneSymbol.LENGTH0.0040.0000.004
strPur1.genscan.LENGTH0.0520.0000.052
strPur1.refGene.LENGTH0.0030.0000.004
strPur1.xenoRefGene.LENGTH0.3460.0040.351
strPur2.geneSymbol.LENGTH0.0040.0000.004
strPur2.genscan.LENGTH0.0820.0000.082
strPur2.refGene.LENGTH0.0000.0040.003
strPur2.xenoRefGene.LENGTH0.4490.0000.450
supportedGeneIDs0.1130.0083.095
supportedGenomes0.1540.0051.108
taeGut1.ensGene.LENGTH0.0570.0000.056
taeGut1.geneSymbol.LENGTH0.0030.0000.002
taeGut1.genscan.LENGTH0.0290.0000.029
taeGut1.nscanGene.LENGTH0.0230.0000.025
taeGut1.refGene.LENGTH0.0000.0020.002
taeGut1.xenoRefGene.LENGTH0.3590.0080.366
tetNig1.ensGene.LENGTH0.0740.0000.074
tetNig1.geneid.LENGTH0.0610.0040.064
tetNig1.genscan.LENGTH0.0450.0000.045
tetNig1.nscanGene.LENGTH0.0670.0000.067
tetNig2.ensGene.LENGTH0.0660.0000.066
unfactor0.0030.0000.003
xenTro1.genscan.LENGTH0.0720.0000.073
xenTro2.ensGene.LENGTH0.0740.0000.074
xenTro2.geneSymbol.LENGTH0.0270.0000.027
xenTro2.genscan.LENGTH0.0650.0040.069
xenTro2.refGene.LENGTH0.0250.0000.024