Back to Build/check report for BioC 3.14 experimental data
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This page was generated on 2021-10-21 15:52:03 -0400 (Thu, 21 Oct 2021).

CHECK results for ewceData on nebbiolo2

To the developers/maintainers of the ewceData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 114/406HostnameOS / ArchINSTALLBUILDCHECK
ewceData 1.1.0  (landing page)
Alan Murphy
Snapshot Date: 2021-10-21 09:30:01 -0400 (Thu, 21 Oct 2021)
git_url: https://git.bioconductor.org/packages/ewceData
git_branch: master
git_last_commit: 18f0922
git_last_commit_date: 2021-05-19 12:12:15 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ewceData
Version: 1.1.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ewceData_1.1.0.tar.gz
StartedAt: 2021-10-21 12:16:48 -0400 (Thu, 21 Oct 2021)
EndedAt: 2021-10-21 12:18:49 -0400 (Thu, 21 Oct 2021)
EllapsedTime: 121.0 seconds
RetCode: 0
Status:   OK  
CheckDir: ewceData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ewceData_1.1.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/ewceData.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ewceData/DESCRIPTION’ ... OK
* this is package ‘ewceData’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ewceData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
all_hgnc 4.172  0.236   5.064
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

ewceData.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL ewceData
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘ewceData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ewceData)

Tests output


Example timings

ewceData.Rcheck/ewceData-Ex.timings

nameusersystemelapsed
all_hgnc4.1720.2365.064
all_hgnc_wtEnsembl1.6780.0591.856
all_mgi2.0770.0212.207
all_mgi_wtEnsembl1.5740.0511.735
alzh_gwas_top1000.0010.0000.000
cortex_mrna3.2690.3083.704
ctd4.2490.0884.446
ensembl_transcript_lengths_GCcontent2.2610.1122.478
ewceData-Package1.6160.0441.775
example_genelist1.6020.0571.776
hpsd_genes1.6800.0161.805
hypothalamus_mrna1.8050.0681.981
id_genes1.7420.0241.883
mgi_synonym_data2.1010.0522.271
mouse_to_human_homologs2.0160.1282.269
rbfox_genes1.9240.1962.244
schiz_genes1.8460.0322.070
tt_alzh2.1460.1522.405
tt_alzh_BA361.9320.0642.101
tt_alzh_BA441.8860.2002.194