Back to Build/check report for BioC 3.14 experimental data
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This page was generated on 2022-01-19 14:50:22 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for breastCancerUNT on nebbiolo2


To the developers/maintainers of the breastCancerUNT package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 40/408HostnameOS / ArchINSTALLBUILDCHECK
breastCancerUNT 1.32.0  (landing page)
Markus Schroeder , Benjamin Haibe-Kains
Snapshot Date: 2022-01-19 07:30:01 -0500 (Wed, 19 Jan 2022)
git_url: https://git.bioconductor.org/packages/breastCancerUNT
git_branch: RELEASE_3_14
git_last_commit: 68cc143
git_last_commit_date: 2021-10-26 11:46:23 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: breastCancerUNT
Version: 1.32.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:breastCancerUNT.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings breastCancerUNT_1.32.0.tar.gz
StartedAt: 2022-01-19 11:16:09 -0500 (Wed, 19 Jan 2022)
EndedAt: 2022-01-19 11:17:18 -0500 (Wed, 19 Jan 2022)
EllapsedTime: 68.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: breastCancerUNT.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:breastCancerUNT.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings breastCancerUNT_1.32.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/breastCancerUNT.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘breastCancerUNT/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘breastCancerUNT’ version ‘1.32.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘breastCancerUNT’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 48.4Mb
  sub-directories of 1Mb or more:
    data  48.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
          old_size new_size compress
  unt.rda   48.4Mb   42.0Mb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/breastCancerUNT.Rcheck/00check.log’
for details.



Installation output

breastCancerUNT.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL breastCancerUNT
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘breastCancerUNT’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (breastCancerUNT)

Tests output


Example timings

breastCancerUNT.Rcheck/breastCancerUNT-Ex.timings

nameusersystemelapsed
unt1.1450.0601.204