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This page was generated on 2021-10-21 15:52:03 -0400 (Thu, 21 Oct 2021).

CHECK results for SingleCellMultiModal on nebbiolo2

To the developers/maintainers of the SingleCellMultiModal package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 351/406HostnameOS / ArchINSTALLBUILDCHECK
SingleCellMultiModal 1.5.10  (landing page)
Marcel Ramos
Snapshot Date: 2021-10-21 09:30:01 -0400 (Thu, 21 Oct 2021)
git_url: https://git.bioconductor.org/packages/SingleCellMultiModal
git_branch: master
git_last_commit: adcd0ff
git_last_commit_date: 2021-10-15 17:37:20 -0400 (Fri, 15 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SingleCellMultiModal
Version: 1.5.10
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:SingleCellMultiModal.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings SingleCellMultiModal_1.5.10.tar.gz
StartedAt: 2021-10-21 12:40:11 -0400 (Thu, 21 Oct 2021)
EndedAt: 2021-10-21 12:43:35 -0400 (Thu, 21 Oct 2021)
EllapsedTime: 203.5 seconds
RetCode: 0
Status:   OK  
CheckDir: SingleCellMultiModal.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:SingleCellMultiModal.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings SingleCellMultiModal_1.5.10.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/SingleCellMultiModal.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SingleCellMultiModal/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SingleCellMultiModal’ version ‘1.5.10’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SingleCellMultiModal’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘BiocGenerics:::replaceSlots’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
CITEseq              11.338  1.009  13.086
SingleCellMultiModal  7.347  0.245   8.987
scNMT                 5.238  0.132   6.355
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/SingleCellMultiModal.Rcheck/00check.log’
for details.



Installation output

SingleCellMultiModal.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL SingleCellMultiModal
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘SingleCellMultiModal’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SingleCellMultiModal)

Tests output


Example timings

SingleCellMultiModal.Rcheck/SingleCellMultiModal-Ex.timings

nameusersystemelapsed
CITEseq11.338 1.00913.086
GTseq1.6970.0832.274
SCoPE22.1950.0402.685
SingleCellMultiModal-package0.0130.0050.018
SingleCellMultiModal7.3470.2458.987
scMultiome2.3550.0682.928
scNMT5.2380.1326.355
scmmCache0.0010.0000.001
seqFISH2.7590.0593.313