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This page was generated on 2021-10-16 15:51:46 -0400 (Sat, 16 Oct 2021).

CHECK results for SCATEData on nebbiolo2

To the developers/maintainers of the SCATEData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 333/404HostnameOS / ArchINSTALLBUILDCHECK
SCATEData 1.3.0  (landing page)
Wenpin Hou
Snapshot Date: 2021-10-16 09:30:02 -0400 (Sat, 16 Oct 2021)
git_url: https://git.bioconductor.org/packages/SCATEData
git_branch: master
git_last_commit: 51d012c
git_last_commit_date: 2021-05-19 12:10:42 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SCATEData
Version: 1.3.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:SCATEData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings SCATEData_1.3.0.tar.gz
StartedAt: 2021-10-16 12:34:15 -0400 (Sat, 16 Oct 2021)
EndedAt: 2021-10-16 12:37:48 -0400 (Sat, 16 Oct 2021)
EllapsedTime: 212.2 seconds
RetCode: 0
Status:   OK  
CheckDir: SCATEData.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:SCATEData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings SCATEData_1.3.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/SCATEData.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SCATEData/DESCRIPTION’ ... OK
* this is package ‘SCATEData’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SCATEData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 190.0Mb
  sub-directories of 1Mb or more:
    extdata  189.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: hg19.rds.Rd:18-19: Dropping empty section \usage
prepare_Rd: mm10.rds.Rd:18-19: Dropping empty section \usage
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
hg19.rds 7.947  0.252   8.199
mm10.rds 5.240  0.224   5.465
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/SCATEData.Rcheck/00check.log’
for details.



Installation output

SCATEData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL SCATEData
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘SCATEData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2021-10-15
** testing if installed package can be loaded from final location
snapshotDate(): 2021-10-15
** testing if installed package keeps a record of temporary installation path
* DONE (SCATEData)

Tests output


Example timings

SCATEData.Rcheck/SCATEData-Ex.timings

nameusersystemelapsed
GSM1596831.bam0.0550.0000.055
GSM1596840.bam0.0700.0040.074
GSM1596874.bam0.0370.0080.045
GSM1596881.bam0.0450.0000.046
GSM1596940.bam0.0190.0000.019
GSM1596942.bam0.0340.0080.042
GSM1596944.bam0.0820.0000.082
GSM1596961.bam0.0810.0040.086
GSM1597041.bam0.0640.0000.064
GSM1597096.bam0.0470.0080.055
SRR1779746.bam0.0610.0120.074
SRR1779805.bam0.0950.0000.097
SRR1779856.bam0.0190.0000.019
SRR1779874.bam0.1190.0000.119
SRR1779956.bam0.0720.0000.073
SRR1779959.bam0.0690.0000.069
SRR1779973.bam0.0440.0000.044
SRR1780018.bam0.0220.0000.022
SRR1780020.bam0.0390.0000.040
SRR1780054.bam0.0910.0000.092
hg19.rds7.9470.2528.199
mm10.rds5.2400.2245.465