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This page was generated on 2021-10-19 15:52:18 -0400 (Tue, 19 Oct 2021).

CHECK results for LiebermanAidenHiC2009 on nebbiolo2

To the developers/maintainers of the LiebermanAidenHiC2009 package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 198/404HostnameOS / ArchINSTALLBUILDCHECK
LiebermanAidenHiC2009 0.31.0  (landing page)
Felix Klein
Snapshot Date: 2021-10-19 09:30:02 -0400 (Tue, 19 Oct 2021)
git_url: https://git.bioconductor.org/packages/LiebermanAidenHiC2009
git_branch: master
git_last_commit: 9bd1b78
git_last_commit_date: 2021-05-19 11:32:18 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: LiebermanAidenHiC2009
Version: 0.31.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:LiebermanAidenHiC2009.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings LiebermanAidenHiC2009_0.31.0.tar.gz
StartedAt: 2021-10-19 12:22:38 -0400 (Tue, 19 Oct 2021)
EndedAt: 2021-10-19 12:23:16 -0400 (Tue, 19 Oct 2021)
EllapsedTime: 38.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: LiebermanAidenHiC2009.Rcheck
Warnings: 2

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:LiebermanAidenHiC2009.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings LiebermanAidenHiC2009_0.31.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/LiebermanAidenHiC2009.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LiebermanAidenHiC2009/DESCRIPTION’ ... OK
* this is package ‘LiebermanAidenHiC2009’ version ‘0.31.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LiebermanAidenHiC2009’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.3Mb
  sub-directories of 1Mb or more:
    data   9.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  ‘DNAse1.df’ ‘DNAse2.df’ ‘H3K27me3.df’ ‘H3K36me3.df’ ‘HiC_GM_chr14’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  ChipSeqData.RData     203Kb    119Kb       xz
  HiC_GM_chr14.RData    9.0Mb    6.0Mb       xz
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/LiebermanAidenHiC2009.Rcheck/00check.log’
for details.



Installation output

LiebermanAidenHiC2009.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL LiebermanAidenHiC2009
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘LiebermanAidenHiC2009’ ...
** using staged installation
** data
** inst
** help
No man pages found in package  ‘LiebermanAidenHiC2009’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LiebermanAidenHiC2009)

Tests output


Example timings