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This page was generated on 2021-10-16 15:51:46 -0400 (Sat, 16 Oct 2021).

CHECK results for KEGGdzPathwaysGEO on nebbiolo2

To the developers/maintainers of the KEGGdzPathwaysGEO package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 193/404HostnameOS / ArchINSTALLBUILDCHECK
KEGGdzPathwaysGEO 1.31.0  (landing page)
Gaurav Bhatti
Snapshot Date: 2021-10-16 09:30:02 -0400 (Sat, 16 Oct 2021)
git_url: https://git.bioconductor.org/packages/KEGGdzPathwaysGEO
git_branch: master
git_last_commit: b7b8122
git_last_commit_date: 2021-05-19 11:35:17 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: KEGGdzPathwaysGEO
Version: 1.31.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:KEGGdzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings KEGGdzPathwaysGEO_1.31.0.tar.gz
StartedAt: 2021-10-16 12:20:22 -0400 (Sat, 16 Oct 2021)
EndedAt: 2021-10-16 12:24:46 -0400 (Sat, 16 Oct 2021)
EllapsedTime: 263.4 seconds
RetCode: 0
Status:   OK  
CheckDir: KEGGdzPathwaysGEO.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:KEGGdzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings KEGGdzPathwaysGEO_1.31.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.31.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 300.8Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘Biobase’ ‘BiocGenerics’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.



Installation output

KEGGdzPathwaysGEO.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL KEGGdzPathwaysGEO
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KEGGdzPathwaysGEO)

Tests output


Example timings

KEGGdzPathwaysGEO.Rcheck/KEGGdzPathwaysGEO-Ex.timings

nameusersystemelapsed
GSE12970.0460.0000.046
GSE147620.0930.0090.102
GSE154710.2550.0070.263
GSE165150.1230.0160.139
GSE188420.2910.0320.324
GSE191880.5210.0370.557
GSE197280.0950.0070.103
GSE201530.0790.0070.088
GSE202910.0500.0070.058
GSE213540.0920.0040.096
GSE34670.0880.0040.092
GSE35850.0280.0040.032
GSE36780.0820.0000.082
GSE41070.1060.0010.107
GSE5281_EC0.0980.0000.099
GSE5281_HIP0.1070.0030.111
GSE5281_VCX0.1190.0040.122
GSE6956AA0.0280.0000.028
GSE6956C0.0670.0050.071
GSE7810.0350.0000.034
GSE86710.2150.0080.224
GSE87620.1100.0030.115
GSE93480.2940.0030.298
GSE94760.0830.0080.091
KEGGdzPathwaysGEO-package0.2410.0210.261