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This page was generated on 2021-10-16 15:51:46 -0400 (Sat, 16 Oct 2021).

CHECK results for HDCytoData on nebbiolo2

To the developers/maintainers of the HDCytoData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 166/404HostnameOS / ArchINSTALLBUILDCHECK
HDCytoData 1.13.0  (landing page)
Lukas M. Weber
Snapshot Date: 2021-10-16 09:30:02 -0400 (Sat, 16 Oct 2021)
git_url: https://git.bioconductor.org/packages/HDCytoData
git_branch: master
git_last_commit: 17bf796
git_last_commit_date: 2021-05-19 12:04:31 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: HDCytoData
Version: 1.13.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:HDCytoData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings HDCytoData_1.13.0.tar.gz
StartedAt: 2021-10-16 12:18:01 -0400 (Sat, 16 Oct 2021)
EndedAt: 2021-10-16 12:21:56 -0400 (Sat, 16 Oct 2021)
EllapsedTime: 235.1 seconds
RetCode: 0
Status:   OK  
CheckDir: HDCytoData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:HDCytoData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings HDCytoData_1.13.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/HDCytoData.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HDCytoData/DESCRIPTION’ ... OK
* this is package ‘HDCytoData’ version ‘1.13.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HDCytoData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
Samusik_all_SE        9.436  0.609  10.320
Bodenmiller_BCR_XL_SE 6.344  0.688   7.281
Levine_32dim_SE       5.118  0.152   5.484
Mosmann_rare_SE       4.943  0.164   5.381
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

HDCytoData.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL HDCytoData
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘HDCytoData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2021-10-15
** testing if installed package can be loaded from final location
snapshotDate(): 2021-10-15
** testing if installed package keeps a record of temporary installation path
* DONE (HDCytoData)

Tests output


Example timings

HDCytoData.Rcheck/HDCytoData-Ex.timings

nameusersystemelapsed
Bodenmiller_BCR_XL_SE6.3440.6887.281
Krieg_Anti_PD_1_SE4.0580.1444.489
Levine_13dim_SE3.2530.1043.770
Levine_32dim_SE5.1180.1525.484
Mosmann_rare_SE4.9430.1645.381
Nilsson_rare_SE3.1320.0523.423
Samusik_01_SE3.6910.1284.058
Samusik_all_SE 9.436 0.60910.320
Weber_AML_sim_main_5pc_SE4.2570.1724.684
Weber_BCR_XL_sim_main_SE3.1750.1083.508