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This page was generated on 2021-12-01 18:35:25 -0500 (Wed, 01 Dec 2021).

CHECK results for GenomicDistributionsData on nebbiolo2

To the developers/maintainers of the GenomicDistributionsData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 142/408HostnameOS / ArchINSTALLBUILDCHECK
GenomicDistributionsData 1.2.0  (landing page)
Kristyna Kupkova
Snapshot Date: 2021-12-01 08:30:01 -0500 (Wed, 01 Dec 2021)
git_url: https://git.bioconductor.org/packages/GenomicDistributionsData
git_branch: RELEASE_3_14
git_last_commit: da32d34
git_last_commit_date: 2021-10-26 12:39:32 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GenomicDistributionsData
Version: 1.2.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:GenomicDistributionsData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings GenomicDistributionsData_1.2.0.tar.gz
StartedAt: 2021-12-01 15:19:57 -0500 (Wed, 01 Dec 2021)
EndedAt: 2021-12-01 15:24:07 -0500 (Wed, 01 Dec 2021)
EllapsedTime: 250.0 seconds
RetCode: 0
Status:   OK  
CheckDir: GenomicDistributionsData.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:GenomicDistributionsData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings GenomicDistributionsData_1.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/GenomicDistributionsData.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GenomicDistributionsData/DESCRIPTION’ ... OK
* this is package ‘GenomicDistributionsData’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .travis.yml
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GenomicDistributionsData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/GenomicDistributionsData.Rcheck/00check.log’
for details.



Installation output

GenomicDistributionsData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL GenomicDistributionsData
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘GenomicDistributionsData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2021-10-19
** testing if installed package can be loaded from final location
snapshotDate(): 2021-10-19
** testing if installed package keeps a record of temporary installation path
* DONE (GenomicDistributionsData)

Tests output


Example timings

GenomicDistributionsData.Rcheck/GenomicDistributionsData-Ex.timings

nameusersystemelapsed
GenomicDistributionsData000
TSS_hg193.0360.2363.418
TSS_hg381.9370.2612.282
TSS_mm101.8250.0711.991
TSS_mm91.8540.0171.954
buildChromSizes000
buildGeneModels0.0010.0000.000
buildOpenSignalMatrix000
buildTSS0.0000.0000.001
chromSizes_hg191.6220.0401.746
chromSizes_hg381.6280.0121.726
chromSizes_mm101.5050.0201.609
chromSizes_mm91.4870.0281.597
geneModels_hg191.7320.0191.835
geneModels_hg381.7440.0281.958
geneModels_mm101.7820.0121.882
geneModels_mm91.8680.0522.020
loadBSgenome000
loadEnsDb0.0000.0000.001
loadTxDb000
openSignalMatrix_hg190.0010.0000.000
openSignalMatrix_hg38000
openSignalMatrix_mm10000