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This page was generated on 2021-12-01 18:35:25 -0500 (Wed, 01 Dec 2021).

CHECK results for FANTOM3and4CAGE on nebbiolo2

To the developers/maintainers of the FANTOM3and4CAGE package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 118/408HostnameOS / ArchINSTALLBUILDCHECK
FANTOM3and4CAGE 1.30.0  (landing page)
Vanja Haberle
Snapshot Date: 2021-12-01 08:30:01 -0500 (Wed, 01 Dec 2021)
git_url: https://git.bioconductor.org/packages/FANTOM3and4CAGE
git_branch: RELEASE_3_14
git_last_commit: ff2149c
git_last_commit_date: 2021-10-26 11:58:29 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: FANTOM3and4CAGE
Version: 1.30.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:FANTOM3and4CAGE.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings FANTOM3and4CAGE_1.30.0.tar.gz
StartedAt: 2021-12-01 15:17:24 -0500 (Wed, 01 Dec 2021)
EndedAt: 2021-12-01 15:18:14 -0500 (Wed, 01 Dec 2021)
EllapsedTime: 49.8 seconds
RetCode: 0
Status:   OK  
CheckDir: FANTOM3and4CAGE.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:FANTOM3and4CAGE.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings FANTOM3and4CAGE_1.30.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/FANTOM3and4CAGE.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘FANTOM3and4CAGE/DESCRIPTION’ ... OK
* this is package ‘FANTOM3and4CAGE’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FANTOM3and4CAGE’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 34.4Mb
  sub-directories of 1Mb or more:
    data  34.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
FANTOMtissueCAGEhuman 6.377   0.36   6.737
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/FANTOM3and4CAGE.Rcheck/00check.log’
for details.



Installation output

FANTOM3and4CAGE.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL FANTOM3and4CAGE
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘FANTOM3and4CAGE’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FANTOM3and4CAGE)

Tests output


Example timings

FANTOM3and4CAGE.Rcheck/FANTOM3and4CAGE-Ex.timings

nameusersystemelapsed
FANTOMhumanSamples0.0120.0010.013
FANTOMmouseSamples0.0020.0000.002
FANTOMtimecourseCAGEhuman2.8680.1923.061
FANTOMtimecourseCAGEmouse0.1890.0160.205
FANTOMtissueCAGEhuman6.3770.3606.737
FANTOMtissueCAGEmouse2.5800.0522.632