Back to Build/check report for BioC 3.14 experimental data
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This page was generated on 2021-11-24 18:35:26 -0500 (Wed, 24 Nov 2021).

CHECK results for EatonEtAlChIPseq on nebbiolo2

To the developers/maintainers of the EatonEtAlChIPseq package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 108/408HostnameOS / ArchINSTALLBUILDCHECK
EatonEtAlChIPseq 0.32.0  (landing page)
Patrick Aboyoun
Snapshot Date: 2021-11-24 08:30:01 -0500 (Wed, 24 Nov 2021)
git_url: https://git.bioconductor.org/packages/EatonEtAlChIPseq
git_branch: RELEASE_3_14
git_last_commit: 838d6b6
git_last_commit_date: 2021-10-26 11:45:32 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: EatonEtAlChIPseq
Version: 0.32.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:EatonEtAlChIPseq.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings EatonEtAlChIPseq_0.32.0.tar.gz
StartedAt: 2021-11-24 15:33:52 -0500 (Wed, 24 Nov 2021)
EndedAt: 2021-11-24 15:35:39 -0500 (Wed, 24 Nov 2021)
EllapsedTime: 107.1 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: EatonEtAlChIPseq.Rcheck
Warnings: 1

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:EatonEtAlChIPseq.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings EatonEtAlChIPseq_0.32.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/EatonEtAlChIPseq.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EatonEtAlChIPseq/DESCRIPTION’ ... OK
* this is package ‘EatonEtAlChIPseq’ version ‘0.32.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EatonEtAlChIPseq’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 20.6Mb
  sub-directories of 1Mb or more:
    extdata  20.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... WARNING
Output for data("orcAlignsRep1", package = "EatonEtAlChIPseq"):
  Search path was changed
Output for data("orcAlignsRep2", package = "EatonEtAlChIPseq"):
  Search path was changed
Output for data("orcPeaksRep1", package = "EatonEtAlChIPseq"):
  Search path was changed
Output for data("orcPeaksRep2", package = "EatonEtAlChIPseq"):
  Search path was changed
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
orcAligns 5.945   0.18   6.124
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/EatonEtAlChIPseq.Rcheck/00check.log’
for details.



Installation output

EatonEtAlChIPseq.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL EatonEtAlChIPseq
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘EatonEtAlChIPseq’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EatonEtAlChIPseq)

Tests output


Example timings

EatonEtAlChIPseq.Rcheck/EatonEtAlChIPseq-Ex.timings

nameusersystemelapsed
orcAligns5.9450.1806.124
orcPeaks0.1900.0000.191