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This page was generated on 2021-12-01 18:35:25 -0500 (Wed, 01 Dec 2021).

CHECK results for DmelSGI on nebbiolo2

To the developers/maintainers of the DmelSGI package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 96/408HostnameOS / ArchINSTALLBUILDCHECK
DmelSGI 1.26.0  (landing page)
Mike Smith
Snapshot Date: 2021-12-01 08:30:01 -0500 (Wed, 01 Dec 2021)
git_url: https://git.bioconductor.org/packages/DmelSGI
git_branch: RELEASE_3_14
git_last_commit: 5b3fb3e
git_last_commit_date: 2021-10-26 12:12:43 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: DmelSGI
Version: 1.26.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:DmelSGI.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings DmelSGI_1.26.0.tar.gz
StartedAt: 2021-12-01 15:15:10 -0500 (Wed, 01 Dec 2021)
EndedAt: 2021-12-01 15:16:04 -0500 (Wed, 01 Dec 2021)
EllapsedTime: 54.6 seconds
RetCode: 0
Status:   OK  
CheckDir: DmelSGI.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:DmelSGI.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings DmelSGI_1.26.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/DmelSGI.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DmelSGI/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DmelSGI’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DmelSGI’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 139.3Mb
  sub-directories of 1Mb or more:
    Rscripts    1.7Mb
    data      137.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/DmelSGI.Rcheck/00check.log’
for details.



Installation output

DmelSGI.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL DmelSGI
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘DmelSGI’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DmelSGI)

Tests output


Example timings

DmelSGI.Rcheck/DmelSGI-Ex.timings

nameusersystemelapsed
ChromatinSet-package3.2720.0763.348
DPiM0.0120.0000.012
FBgn2anno0.2570.0190.278
Features0.0030.0000.003
Interactions1.6710.0481.718
Intogen0.0080.0000.007
RohnEtAl0.0020.0000.002
SKDdata0.3060.0120.318
SelectedClusters0.0020.0000.002
SelectedClustersComplexes0.0010.0000.001
TID2HUGO0.0050.0000.004
applyDimensionReduction0.0010.0000.002
callInteractions0.0000.0000.001
datamatrix3.2370.0763.313
estimatePairwiseInteractions0.0010.0000.001
fitepistasis0.1090.0160.125
getBaseDir0.0010.0000.000
grid.spider0.0010.0000.001
hrNames0.0000.0000.001
learnCoComplexityFct0.0010.0000.000
mainEffects0.0590.0040.063
myHeatmap0.0000.0000.001
mymedpolish0.0010.0000.001
orderDim000
orderSpiderAxis0.0010.0000.000
pimatrix0.4680.0520.520
plot2Phenotypes0.0010.0000.001
plotHairballLabels0.0010.0000.001
qualityControlFeature0.0030.0000.002
qualityControlGene0.0120.0000.012
selectByStability0.0010.0000.001
stabilitySelection0.1080.0000.108
subSampleForStabilitySelection0.0540.0000.054
subSampleForStabilitySelectionFct0.0010.0000.000
toMatrix000
toRaster000
trsf000